Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,632,585 – 1,632,679 |
Length | 94 |
Max. P | 0.817274 |
Location | 1,632,585 – 1,632,679 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 89.40 |
Mean single sequence MFE | -26.06 |
Consensus MFE | -21.38 |
Energy contribution | -20.38 |
Covariance contribution | -1.00 |
Combinations/Pair | 1.19 |
Mean z-score | -1.81 |
Structure conservation index | 0.82 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.817274 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1632585 94 + 20766785 AACUUUUCGUCUCUUUGUG-------UUAUAAGGCAGUAAAACUGGUUUUAAGCCGUACUCAUGCGCCAAAGAGCAAGCGAGACAAGGCGAAAGCUUAGAA ....(((((((((((((((-------(.....(((..(((((....))))).)))........))).)))))))...))))))..((((....)))).... ( -26.02) >DroSec_CAF1 18387 94 + 1 AACUUUUCGUCUCUUUGUG-------UUAUAAGGCACUAAAACUGGUUUUAAGCCAUACUCAUGCGCCAAAGAGCGAGCGAGACAAGGCGAAAGCUUAGAA ..(((((((.(((((((((-------(..((.(((..(((((....))))).))).)).....))).))))))))))).)))...((((....)))).... ( -25.40) >DroSim_CAF1 16810 94 + 1 AACUUUUCGUCUCUUUGUG-------UUAUAAGGCACUAAAACUGGUUUUAAGCCGUACUCAUGCGCCAAAGAGCAAGCGAGACAGGGCGAAAGCUUAGAA ....(((((((((((((((-------(.....(((..(((((....))))).)))........))).)))))))...))))))(..(((....)))..).. ( -25.72) >DroEre_CAF1 20828 101 + 1 AGCAUUUCGCUUCUUUGUGUUAUGUGUUAUAAGGCACUAAAACUGGUUUUAUACCAUACUCAGCCGCCAAAGAGUGAGCGAGACAAGGCGAAAGCUUAGAA (((.(((((((...((((....((((.((((((((.(.......))))))))).))))(((.(((((......))).)))))))))))))))))))..... ( -27.10) >consensus AACUUUUCGUCUCUUUGUG_______UUAUAAGGCACUAAAACUGGUUUUAAGCCAUACUCAUGCGCCAAAGAGCAAGCGAGACAAGGCGAAAGCUUAGAA ....(((((((((((((((........)))..(((........((((.....)))).........)))))))))...))))))..((((....)))).... (-21.38 = -20.38 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:30 2006