Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,905,589 – 8,905,697 |
Length | 108 |
Max. P | 0.863566 |
Location | 8,905,589 – 8,905,697 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 96.36 |
Mean single sequence MFE | -29.87 |
Consensus MFE | -27.29 |
Energy contribution | -27.48 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.03 |
Mean z-score | -1.31 |
Structure conservation index | 0.91 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.863566 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8905589 108 - 20766785 -AUGCACGGAUAUGAGCACCACCAAAUCAGCCGGCUGAGGCGAAUGAAACAUUUGGUUUAAGUGCUAAAUAAAUUCAAGUAAUGAGUUUGCCUCUGUCUGUGGGUGUGC -((.((((((((..(((((.((((((((((((......)))...)))....))))))....)))))...((((((((.....))))))))....)))))))).)).... ( -30.60) >DroSec_CAF1 150468 108 - 1 -AUGCACGGAUAUGAGCACCACCAAAUCAGCCGGCUGAGGCGAAUGAAACAUUUGGUUUAAGUGCUAAAUAAAUUCAAGUAAUGAGUUUGCCUCUGUCUGUGGGUGUGC -((.((((((((..(((((.((((((((((((......)))...)))....))))))....)))))...((((((((.....))))))))....)))))))).)).... ( -30.60) >DroSim_CAF1 150628 108 - 1 -AUGCACGGAUAUGAGCACCACCAAAUCAGCCGGCUGAGGCGAAUGAAACAUUUGGUUUAAGUGCUAAAUAAAUUCAAGUAAUGAGUUUGCCUCUGUCUGUGGGUGUGG -((.((((((((..(((((.((((((((((((......)))...)))....))))))....)))))...((((((((.....))))))))....)))))))).)).... ( -30.60) >DroEre_CAF1 153851 105 - 1 -AUGCACGGAUAUGAGCA---CCAAAUCAGCCGGCUGAGGCGAAUGAAACAUUUGGUUUAAGUGCUAAAUAAAUUCAAGUAAUGAGUUUGCCUCUGUCUGUGGGUGUGC -..((((((...(((...---.....))).))(((.(((((((((.....(((((((......)))))))....(((.....)))))))))))).))).......)))) ( -30.20) >DroYak_CAF1 156851 106 - 1 UAUGCAAGGAUAUGAGCA---CCAAAUCAGCCGGCUGAGGCGAAUGAAACAUUUGGUUUAAGUGCUAAAUAAAUUCAAGUAAUGAGUUUGCCUCUGUCUGUGGGUGUGC ...............(((---((......((.(((.(((((((((.....(((((((......)))))))....(((.....)))))))))))).))).)).))))).. ( -29.30) >DroAna_CAF1 150416 106 - 1 -AUGUACGGAUAUGAGC--CACCAAAUCAGCCGGCUGAGGCGAAUGAAACAUUUGGUUUAAGUGCUAAAUAAAUUCAAGUAAUGAGUUUGCCGCUGUCUGUGGGUGUGU -((.(((((((...(((--.......((((....))))(((((((.....(((((((......)))))))....(((.....)))))))))))))))))))).)).... ( -27.90) >consensus _AUGCACGGAUAUGAGCA_CACCAAAUCAGCCGGCUGAGGCGAAUGAAACAUUUGGUUUAAGUGCUAAAUAAAUUCAAGUAAUGAGUUUGCCUCUGUCUGUGGGUGUGC .((.((((((((.((...........((((....))))(((((((.....(((((((......)))))))....(((.....)))))))))))))))))))).)).... (-27.29 = -27.48 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:17 2006