Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,904,650 – 8,904,742 |
Length | 92 |
Max. P | 0.872113 |
Location | 8,904,650 – 8,904,742 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 73.81 |
Mean single sequence MFE | -28.96 |
Consensus MFE | -16.54 |
Energy contribution | -15.60 |
Covariance contribution | -0.94 |
Combinations/Pair | 1.26 |
Mean z-score | -1.94 |
Structure conservation index | 0.57 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.872113 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8904650 92 - 20766785 CAGCCUACGGAGACCAGCACAGGAUAC---CGGCCACUUGGCA-CCCUCCUCCACUUUCUG--------CUCCUGCUGCUGGUCCUAGUUCAGUUCUCCGUCUC ......((((((((((((((((((...---..(((....))).-........((.....))--------.))))).))))))))((.....))...)))))... ( -28.10) >DroSec_CAF1 149470 92 - 1 CAGCCUACGGAGACCAGCACAGGAUAC---CGGCCACUUGGCA-GCCUCCUCCAUCUCCUG--------CUUAUGCUGCUGGUCCUGAUUCCGCUCUCCGUCUC ......(((((((.(.(..(((((..(---((((..(..((((-(.............)))--------))...)..))))))))))...).).)))))))... ( -28.42) >DroSim_CAF1 149638 92 - 1 CAGCCUACGGAGACCAGCACAGGAUAC---CGGCCACUUGGCA-GCCUCCUCCAUCUCCUG--------CUUAUGCUGCUGGUCCUGAUUCCGCUCUCCGUCUC ......(((((((.(.(..(((((..(---((((..(..((((-(.............)))--------))...)..))))))))))...).).)))))))... ( -28.42) >DroAna_CAF1 149651 100 - 1 CAGCCUACGGAAACUGCCAAAGGACACCGCCGGCCACUUGGCCAUUCUGUGG---CCCGUGGCAGCAUUUUCAUUAAGCCAGCUCUGCCUCAG-UCUCUGUCUC ......(((((.((((....(((.((..((.((((((..((((((...))))---)).))))).((...........))).))..))))))))-).)))))... ( -30.90) >consensus CAGCCUACGGAGACCAGCACAGGAUAC___CGGCCACUUGGCA_GCCUCCUCCAUCUCCUG________CUCAUGCUGCUGGUCCUGAUUCAGCUCUCCGUCUC ......((((((((((((((((........).(((....)))...............................)).))))))))............)))))... (-16.54 = -15.60 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:16 2006