Locus 2487

Sequence ID 2R_DroMel_CAF1
Location 8,903,055 – 8,903,145
Length 90
Max. P 0.848851
window4105

overview

Window 5

Location 8,903,055 – 8,903,145
Length 90
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 88.17
Mean single sequence MFE -24.33
Consensus MFE -18.19
Energy contribution -19.55
Covariance contribution 1.36
Combinations/Pair 1.04
Mean z-score -2.07
Structure conservation index 0.75
SVM decision value 0.78
SVM RNA-class probability 0.848851
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8903055 90 - 20766785
UCUGUGCCUGUUCCCGUUCCGGUGGCUACAUACAUACAUACAUCCGAGGCAUGUUCACUUGGACAAUUAAAGGAGCAGCCCACACACUCA-
..((((.(((((((.((..(((((................)).)))..)).(((((....)))))......)))))))..))))......- ( -24.39)
>DroSec_CAF1 147839 90 - 1
UCUGUGCCUGUUCCCGUUUCGGUGGCUACAUACAUACAUACAUCCGAGGCAUGUUCACUUGGACAAUUAAAGGAGCAGCCCACACACUCA-
..((((.(((((((.(((((((((................)).))))))).(((((....)))))......)))))))..))))......- ( -26.89)
>DroSim_CAF1 148024 90 - 1
UCUGUGCCUGUUCCCGUUUCGGUGGCUACAUACAUACAUACAUCCGAGGCAUGUUCACUUGGACAAUUAAAGGAGCAGCCCACACACUCA-
..((((.(((((((.(((((((((................)).))))))).(((((....)))))......)))))))..))))......- ( -26.89)
>DroEre_CAF1 151489 82 - 1
UCUGUCCCUUUGCCCGUUUUGGUGACUACA--------UACAUCCGAGGCUUGUGCACUUGGACAAUUAAAGGAGCAGCCCACACACUCA-
.(((..((((((...((...(....).)).--------....((((((((....)).))))))....))))))..)))............- ( -22.60)
>DroYak_CAF1 154251 83 - 1
UCAGUCGCUGUGCCCGUAUUGGUGACUACA--------UACAUCCGAGGCUUGUUCACUUGGACAAUUAAAGGAGCAGCCCACACACUCAA
......(((((..((((((.(....)...)--------))).((((((.........))))))........)).)))))............ ( -20.90)
>consensus
UCUGUGCCUGUUCCCGUUUCGGUGGCUACAUACAUACAUACAUCCGAGGCAUGUUCACUUGGACAAUUAAAGGAGCAGCCCACACACUCA_
...(((.(((((((.(((((((((................)).))))))).(((((....)))))......)))))))....)))...... (-18.19 = -19.55 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:15 2006