Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,900,709 – 8,900,801 |
Length | 92 |
Max. P | 0.840745 |
Location | 8,900,709 – 8,900,801 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 81.44 |
Mean single sequence MFE | -18.08 |
Consensus MFE | -14.15 |
Energy contribution | -15.04 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.06 |
Mean z-score | -1.89 |
Structure conservation index | 0.78 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.840745 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8900709 92 + 20766785 -----UCCGCAUCGACGCCCCUGCAUUUGACUUUGCCUGUCAAUAUUUGCUUUUGGCUUAACUAGCACAUACAUACAUACAUACUGUGCACGCCCCA -----...((......(((...(((.(((((.......)))))....)))....))).......(((((...............)))))..)).... ( -19.06) >DroSec_CAF1 145495 84 + 1 -----UCCGCCUGGACGCCCCUGCAUUUGACUUUGCCUGUCAAUAUUUGCUUUUGGCUUAACUAGCACAUA--------CAUACUGUGCACGCCCCA -----.......((..(((...(((.(((((.......)))))....)))....))).......(((((..--------.....))))).....)). ( -20.00) >DroSim_CAF1 145683 84 + 1 -----UCCGCCUGGACGCCCCUGCAUUUGACUUUGCCUGUCAAUAUUUGCUUUUGGCUUAACUAGCACAUA--------CAUACUGUGCACGCCCCA -----.......((..(((...(((.(((((.......)))))....)))....))).......(((((..--------.....))))).....)). ( -20.00) >DroEre_CAF1 149151 92 + 1 -----UUCGCCUCGACGCCCCUGCAUUUGACUUUGCCUGUCAAUAUUUGCUUUUGGCUUAACUAGCGCACAUACUCGUACAUACUGUGCACGCCCCA -----...((......(((...(((.(((((.......)))))....)))....))).......(.(((((.............))))).))).... ( -18.72) >DroYak_CAF1 152036 89 + 1 CCUUCUCCGCCUCGACGCCCCUGCAUUUGACUUUGCCUGUCAAUAUUUGCUUUUGGCUUAACUAGCACA--------UACAUACUGUGCACGCCCCA ........((......(((...(((.(((((.......)))))....)))....))).......(((((--------.......)))))..)).... ( -19.20) >DroMoj_CAF1 202313 85 + 1 ------CUGCU-UG----CUCCGCAUUUGACUUUGCCUGUCAAUAUUUGCCUUUGGCUUAACUAGAACACACACACACACACUCG-CACUCGCUCUC ------..((.-((----(...(((.(((((.......)))))....))).(((((.....)))))..................)-))...)).... ( -11.50) >consensus _____UCCGCCUCGACGCCCCUGCAUUUGACUUUGCCUGUCAAUAUUUGCUUUUGGCUUAACUAGCACAUA______UACAUACUGUGCACGCCCCA ........((......(((...(((.(((((.......)))))....)))....))).......(((((...............)))))..)).... (-14.15 = -15.04 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:14 2006