Locus 2485

Sequence ID 2R_DroMel_CAF1
Location 8,898,490 – 8,898,582
Length 92
Max. P 0.954000
window4103

overview

Window 3

Location 8,898,490 – 8,898,582
Length 92
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 91.67
Mean single sequence MFE -17.68
Consensus MFE -13.61
Energy contribution -13.61
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.45
Structure conservation index 0.77
SVM decision value 1.44
SVM RNA-class probability 0.954000
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8898490 92 + 20766785
CACAAUGACAACACAAUUUUUUGGGUGAAAAAA------------UAAGGGGAGCAUGGAAAAAAUUGCAAGCUCCAUUCAACCGCAAAAAGUGUA-AAAAAAAC
..........((((...((((((((((((....------------.....(((((.((.((....)).)).))))).))).))).)))))))))).-........ ( -19.30)
>DroSec_CAF1 143300 90 + 1
CACAAUGACAACACAAUUUUUUGGGUGAAAAAA------------UAAGGGGAGCAUAGAAAAAAUUGCAGGCUCCAUUCAACCGCAAAAAGUGUA-AA--AAAC
..........((((...((((((((((((....------------.....(((((...((.....))....))))).))).))).)))))))))).-..--.... ( -16.50)
>DroSim_CAF1 143329 90 + 1
CACAAUGACAACACAAUUUUUUGGGUGAAAAAA------------UAAGGGGAGCAUAGAAAAAAUUGCAGGCUCCAUUCAACCGCAAAAAGUGUA-AA--AAAC
..........((((...((((((((((((....------------.....(((((...((.....))....))))).))).))).)))))))))).-..--.... ( -16.50)
>DroEre_CAF1 146909 102 + 1
CACAAUGACAACACAAUUUUUUGGGUGAAAAAAACAAAAAAAAAGUAAGGGGCGCAUAGAAAAAAUUGCAGGCUCCAUUCAACCGCAAAAAGUGUA-AA--AAAG
..........((((...((((((((((((....((.........))..((((((((..........)))..))))).))).))).)))))))))).-..--.... ( -18.90)
>DroYak_CAF1 149603 91 + 1
CACAAUGACAACACAAUUUUUUGGGUGAAAAAA------------UAAGGGGCGCAUAGAAAAAAUUGCAGGCUCCAUUCAACCGCAAAAAGUGUAGAA--AAAG
..........((((...((((((((((((....------------...((((((((..........)))..))))).))).))).))))))))))....--.... ( -17.20)
>consensus
CACAAUGACAACACAAUUUUUUGGGUGAAAAAA____________UAAGGGGAGCAUAGAAAAAAUUGCAGGCUCCAUUCAACCGCAAAAAGUGUA_AA__AAAC
..........((((...((((((((((((...................((((.(((..........)))...)))).))).))).)))))))))).......... (-13.61 = -13.61 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:13 2006