Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,897,000 – 8,897,093 |
Length | 93 |
Max. P | 0.999948 |
Location | 8,897,000 – 8,897,093 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 93.05 |
Mean single sequence MFE | -37.87 |
Consensus MFE | -35.98 |
Energy contribution | -36.15 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -3.11 |
Structure conservation index | 0.95 |
SVM decision value | 4.77 |
SVM RNA-class probability | 0.999948 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8897000 93 + 20766785 GUCGGCAGCAAGUGGCCCUUAUAAUGGGCCAAGGCGUAAGUCCAUGUCUGGCUGCCUGUUCACCUGGCUGACUUUCAGCCCACAUUCCACCCA ...((((((...((((((.......))))))((((((......)))))).)))))).........(((((.....)))))............. ( -37.40) >DroSec_CAF1 141838 93 + 1 GUCGGCAGCAAGUGGCCCUUAUAAUGGGCCAAGGCGUAAGUCCAUGUCUGGCUGCCUGUUCACCUGGCUGACUUUCAGCCCACAUCCCGCCCA ...((((((...((((((.......))))))((((((......)))))).)))))).........(((((.....)))))............. ( -37.40) >DroSim_CAF1 141962 93 + 1 GUCGGCAGCAAGUGGCCCUUAUAAUGGGCCAAGGCGUAAGUCCAUGUCUGGCUGCCUGUUCACCUGGCUGACUUUCAGCCCACAUCCCACCCA ...((((((...((((((.......))))))((((((......)))))).)))))).........(((((.....)))))............. ( -37.40) >DroEre_CAF1 145480 93 + 1 GGCGGCAGCAAGUGGCCCUUAUAAUGGGCCAAGGCGUAAGUCCAUGUCUGGCUGCCUGUUCACCUGGCUGCCUUUCAGCCCACAUGCCACCCA (((((((((...((((((.......))))))((((((......)))))).)))))).........(((((.....))))).....)))..... ( -41.30) >DroYak_CAF1 148073 93 + 1 GUCGGCAGCAAGUGGCCCUUAUAAUGGGCCAAGGCGUAAGUCCAUGUCUGGCUGCCUGUUCACCUGGCUGACUUUCAGCCCACUGACUCCCCG (((((((((...((((((.......))))))((((((......)))))).)))))).........(((((.....)))))....)))...... ( -40.30) >DroAna_CAF1 141672 87 + 1 GUUGGCAGCAAGUGGCCCUUAUAAUGGGCCAAGGCGUAAGUCCAUGUCUGGCUGCCUGUUCACCUGGCUGACUUCCUGCC-A-----CGCCCC ...((((((...((((((.......))))))((((((......)))))).))))))........((((.........)))-)-----...... ( -33.40) >consensus GUCGGCAGCAAGUGGCCCUUAUAAUGGGCCAAGGCGUAAGUCCAUGUCUGGCUGCCUGUUCACCUGGCUGACUUUCAGCCCACAUCCCACCCA ...((((((...((((((.......))))))((((((......)))))).)))))).........(((((.....)))))............. (-35.98 = -36.15 + 0.17)
Location | 8,897,000 – 8,897,093 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 93.05 |
Mean single sequence MFE | -36.77 |
Consensus MFE | -33.25 |
Energy contribution | -33.42 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.93 |
Structure conservation index | 0.90 |
SVM decision value | 1.91 |
SVM RNA-class probability | 0.982094 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8897000 93 - 20766785 UGGGUGGAAUGUGGGCUGAAAGUCAGCCAGGUGAACAGGCAGCCAGACAUGGACUUACGCCUUGGCCCAUUAUAAGGGCCACUUGCUGCCGAC ...((...((.(((.(((.....)))))).))..)).((((((.((....((.......)).((((((.......)))))))).))))))... ( -35.20) >DroSec_CAF1 141838 93 - 1 UGGGCGGGAUGUGGGCUGAAAGUCAGCCAGGUGAACAGGCAGCCAGACAUGGACUUACGCCUUGGCCCAUUAUAAGGGCCACUUGCUGCCGAC ..(((((......(((((.....)))))((((....(((((((((....))).))...)))).(((((.......))))))))).)))))... ( -37.40) >DroSim_CAF1 141962 93 - 1 UGGGUGGGAUGUGGGCUGAAAGUCAGCCAGGUGAACAGGCAGCCAGACAUGGACUUACGCCUUGGCCCAUUAUAAGGGCCACUUGCUGCCGAC ..((..(......(((((.....)))))((((....(((((((((....))).))...)))).(((((.......))))))))).)..))... ( -34.90) >DroEre_CAF1 145480 93 - 1 UGGGUGGCAUGUGGGCUGAAAGGCAGCCAGGUGAACAGGCAGCCAGACAUGGACUUACGCCUUGGCCCAUUAUAAGGGCCACUUGCUGCCGCC ..(((((((.(..((....(((((.(((..(....).)))(((((....))).))...)))))(((((.......))))).))..)))))))) ( -42.10) >DroYak_CAF1 148073 93 - 1 CGGGGAGUCAGUGGGCUGAAAGUCAGCCAGGUGAACAGGCAGCCAGACAUGGACUUACGCCUUGGCCCAUUAUAAGGGCCACUUGCUGCCGAC .......(((.(.(((((.....))))).).)))...((((((.((....((.......)).((((((.......)))))))).))))))... ( -37.00) >DroAna_CAF1 141672 87 - 1 GGGGCG-----U-GGCAGGAAGUCAGCCAGGUGAACAGGCAGCCAGACAUGGACUUACGCCUUGGCCCAUUAUAAGGGCCACUUGCUGCCAAC ..(((.-----(-(((.....))))))).........((((((.((....((.......)).((((((.......)))))))).))))))... ( -34.00) >consensus UGGGUGGGAUGUGGGCUGAAAGUCAGCCAGGUGAACAGGCAGCCAGACAUGGACUUACGCCUUGGCCCAUUAUAAGGGCCACUUGCUGCCGAC .............(((((.....))))).........((((((.((....((.......)).((((((.......)))))))).))))))... (-33.25 = -33.42 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:11 2006