Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,631,642 – 1,631,742 |
Length | 100 |
Max. P | 0.799323 |
Location | 1,631,642 – 1,631,742 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 87.66 |
Mean single sequence MFE | -17.45 |
Consensus MFE | -13.09 |
Energy contribution | -13.65 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.91 |
Structure conservation index | 0.75 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.799323 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1631642 100 - 20766785 AUUGCGAAUCAAGCUGGCCAUUAAUUUUGGAGACAAUUAAGAUUCGCCAUGACAAUAAAUCGCAUCUUGAAAAAAAA--AAAAGAUUAAUUGUUUAUAAAAU ...(((((((....((.(((.......)))...)).....)))))))...((((((.((((................--....)))).))))))........ ( -17.05) >DroSec_CAF1 17444 100 - 1 AUUGCGAAUCAAGAUGCCCAUUAAUUUUGAAGACCAUUAAGAUUCGCUAUGACAAUAAAUCGCAACUUCUAUUAAAA--AAAAGAUUAAUUGUUUAUAAAAU ...(((((((..((((..(.(((....))).)..))))..)))))))(((((((((.((((................--....)))).)))).))))).... ( -16.55) >DroSim_CAF1 15877 102 - 1 AUUGCGAAUCAAGAUGCCCAUUAAUUUUGGAGACCAUUAAGAUUCGCUGUGACAAUAAAUCGCAACUUGUAUUAAAAAAAAAAGAUUAAUUGUUUAUAAAAU ...(((((((..((((((((.......))).)..))))..)))))))(((((((((.((((......................)))).)))).))))).... ( -18.75) >DroEre_CAF1 19972 101 - 1 UACGCGAAUCAAAAAAACCAUUAAUUUUGGAGACAAUUAAGAUUGGCCAUGACAAUAAAUCGAAACUUGGACUAAAA-AAAAAGAUUAAUUGUUUCUAAAAU .......................(((((((((((((((((..(((((((..................))).))))..-.......))))))))))))))))) ( -17.47) >consensus AUUGCGAAUCAAGAUGCCCAUUAAUUUUGGAGACAAUUAAGAUUCGCCAUGACAAUAAAUCGCAACUUGUAUUAAAA__AAAAGAUUAAUUGUUUAUAAAAU ...((((((((((((........)))))(....)......)))))))...((((((.((((......................)))).))))))........ (-13.09 = -13.65 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:29 2006