Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,887,209 – 8,887,299 |
Length | 90 |
Max. P | 0.775261 |
Location | 8,887,209 – 8,887,299 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 93.63 |
Mean single sequence MFE | -20.70 |
Consensus MFE | -16.22 |
Energy contribution | -15.90 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.14 |
Mean z-score | -1.82 |
Structure conservation index | 0.78 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.775261 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8887209 90 - 20766785 UCCGACAUACGGGUUGUGGGCCCAUCAAAUGUUGAUUUCCAUAACAAAUUGAUUUUUGUUUGGAUU--UUUGCAAUGGAUUCAAAUGCAAUU .(((.....)))((..(((..((((....(((.((..((((.((((((......))))))))))..--)).)))))))..)))...)).... ( -21.20) >DroSec_CAF1 131986 90 - 1 UCCGACAUACGGGUUGUGUGCCCAUCAAAUGUUGAUUUCCAUAACAAAUUGAUUUUUGUUUGGAUU--UUUGAAAUGGAUUCAAAUGAAAUU ..((((((..((((.....)))).....))))))...((((.((((((......))))))))))..--((((((.....))))))....... ( -19.50) >DroSim_CAF1 131855 90 - 1 UCCGGCAUACGGGUUGUGUGCCCAUCAAAUGUUGAUUUCCAUAACAAAUUGAUUUUUGUUUGGAUU--UUUGCAAUGGAUUCAAAUGCAAUU ((((((((((.....))))))).......(((.((..((((.((((((......))))))))))..--)).)))..)))............. ( -24.70) >DroEre_CAF1 135274 92 - 1 UCUGACAUACGGGUUGUGUGCCCAUCAAAUGUUGAUUUCCAUAACAAAUUGAUUUUUGUUUGGUUUUUUUUGCAUUGGAUUGAAAUUCUAUU ..........((((.....))))(((.(((((.((...(((.((((((......)))))))))...))...))))).)))............ ( -17.70) >DroYak_CAF1 137301 91 - 1 UCUGACAUACGGGUUGUGUGCCCAUCAAAUGUUGAUUUCCAUAACAAAUUGAUUUUUGUUUGGGUU-UUUUGUAAUGGAUUCAAAUGCAAUU ..((.(((..((((.....))))........((((..(((((.(((((..(((((......)))))-.))))).))))).)))))))))... ( -20.40) >consensus UCCGACAUACGGGUUGUGUGCCCAUCAAAUGUUGAUUUCCAUAACAAAUUGAUUUUUGUUUGGAUU__UUUGCAAUGGAUUCAAAUGCAAUU ((((((((..((((.....)))).....)))))....((((.((((((......))))))))))............)))............. (-16.22 = -15.90 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:04 2006