| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,886,614 – 8,886,720 |
| Length | 106 |
| Max. P | 0.636099 |
| Location | 8,886,614 – 8,886,720 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 81.92 |
| Mean single sequence MFE | -29.65 |
| Consensus MFE | -19.69 |
| Energy contribution | -19.98 |
| Covariance contribution | 0.30 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.636099 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8886614 106 + 20766785 --------AUGGCACACCUGUGCUAGGCCGUAAACCAAUUAGCCAAAUAGGAGCUCGAAUUGCAGCCAGGCUGCUUUUCAGCUUUUCUCGCACAAGGCAUUUUCACCGGCAAUC --------.((((((....)))))).((((..................(((((((.(((..(((((...)))))..))))))))))...((.....))........)))).... ( -32.50) >DroSec_CAF1 131359 106 + 1 --------AUGGCACACCUGUGCUAGGCCGUAAACCAAUUAGCCAAAUAGGAGCUCGAAUUGCAGCCAGGCUGCUUUUCAGCUUUUCUCGCACAAGGCAUUUUCCCCGGCAAUC --------.((((((....)))))).((((..................(((((((.(((..(((((...)))))..))))))))))...((.....))........)))).... ( -32.50) >DroSim_CAF1 131230 106 + 1 --------AUGGCACACCUGUGCUAGGCCGUAAACCAAUUAGCCAAAUAGGAGCUCGAAUUGCAGCCAGGCUGCUUUUCAGCUUUUCUCGCACAAGGCAUUUUCCCCGACAAUC --------.((((((....)))))).((((....)......((.....(((((((.(((..(((((...)))))..))))))))))...))....)))................ ( -28.80) >DroEre_CAF1 134655 105 + 1 --------AUGGCACACCUGUGCUAGGCCGUAAACCAAUUAGCCAAAUAGGAGCUCGAAUUGCAGCCAACCUGCUUUUCAGCUU-UCCCGCACAAGGCAUUUGCCCUGGCAAUC --------.((((((....))))))(((.............))).....((((((.(((..((((.....))))..))))))))-)...((.((.(((....))).)))).... ( -32.72) >DroYak_CAF1 136670 102 + 1 --------AUGGCACACCUGUGCUAGGCCGUAAACCAAUUAGCCAAAUAGGAGCUCGAAUUGCAGCCA----GCUAUUCAGCUUUUCUCGCACAAGGCAUUUUCCCCGGCAAUC --------.((((((....)))))).((((..................(((((((.((((.((.....----)).)))))))))))...((.....))........)))).... ( -26.60) >DroPer_CAF1 149092 101 + 1 UUUGUGCCAGGAUACACCUGUGUGUGGCUGUAAAGCAAUUAUCCAAAUUGCACUUCAAAUUGAA---------CCUCUCUGCUCCCCUU----GAGGCAUUUUGGGUCGCAAUC .....((((((.....)))).))((((((.....((((((.....))))))....((((.((..---------((((............----)))))).)))))))))).... ( -24.80) >consensus ________AUGGCACACCUGUGCUAGGCCGUAAACCAAUUAGCCAAAUAGGAGCUCGAAUUGCAGCCAGGCUGCUUUUCAGCUUUUCUCGCACAAGGCAUUUUCCCCGGCAAUC .........((((((....)))))).(((.....((.(((.....))).))((((.(((..((((.....))))..)))))))............)))................ (-19.69 = -19.98 + 0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:03 2006