Locus 2477

Sequence ID 2R_DroMel_CAF1
Location 8,885,379 – 8,885,484
Length 105
Max. P 0.703978
window4091

overview

Window 1

Location 8,885,379 – 8,885,484
Length 105
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 83.10
Mean single sequence MFE -30.44
Consensus MFE -21.52
Energy contribution -22.08
Covariance contribution 0.56
Combinations/Pair 1.13
Mean z-score -2.13
Structure conservation index 0.71
SVM decision value 0.36
SVM RNA-class probability 0.703978
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8885379 105 + 20766785
AACCGUAGUCCGUUUGCGCUUGCAUUUAAUGCAUUCGCAGCUGCAGGAACAGCCACAUCAGCCGUUGACCACAAAUCGGCAAAUCCAUCUCAGCAGGCGGAUACA-
....(((.((((((((((..(((((...)))))..)))))((((.((.....))......(((((((....)))..))))............)))))))))))).- ( -32.70)
>DroSec_CAF1 130085 105 + 1
AGCCGUAGUCCGUUUGCGCUUGCAUUUAAUGCAUUCGCAGCUGCAGGAACAGCCACAUCAGCCGUUGACCACAAAUCGGCAAAUCCAUCUCAGCAGGCGGAUACA-
....(((.((((((((((..(((((...)))))..)))))((((.((.....))......(((((((....)))..))))............)))))))))))).- ( -32.70)
>DroSim_CAF1 129959 105 + 1
AGCCGUAGUCCGUUUGCGCUUGCAUUUAAUGCAUUCGCAGCUGCAGGAACAGCCACAUCAGCCGUUGACCACAAAUCGGCAAAUCCAUCUCAGCAGGCGGAUACA-
....(((.((((((((((..(((((...)))))..)))))((((.((.....))......(((((((....)))..))))............)))))))))))).- ( -32.70)
>DroEre_CAF1 133103 104 + 1
AGCCGUAGUCCGUCUGCGCUUGCAUUUAAUGCAUUCGCAGCUGCAGGAACA-CCACAUCAGCCGAUGACCACAAAUCGGCAAAUCCAUCUCAACAGGCGCAUACA-
.(((((..((((((((((..(((((...)))))..)))))..)).)))..)-).......((((((........))))))...............))).......- ( -33.20)
>DroYak_CAF1 135171 85 + 1
AGCCGUAGUCCGUCUGCGCUUGCAUUUAAUACAUUCGC---UGCAGG-----------------AUGACCACAAAUCGGCAAAUCCAUCUCAGCAGGCGGAUACA-
....(((.(((((((((((..((.............))---.)).((-----------------((..((.......))...))))......)))))))))))).- ( -27.82)
>DroPer_CAF1 148124 95 + 1
GGCUCUCCUCUGUUUGAGCUUGCAUUUAAUGCAUUUGCAGCAGCAG------CAGCAGC-----AGGACCACAAAUCGGCCAAUCCAUCUAAGCAGGCAGACACCA
((.(((.(.(((((((.(((.((......(((....)))((....)------).)))))-----.((.((.......))))........)))))))).)))..)). ( -23.50)
>consensus
AGCCGUAGUCCGUUUGCGCUUGCAUUUAAUGCAUUCGCAGCUGCAGGAACA_CCACAUCAGCCGAUGACCACAAAUCGGCAAAUCCAUCUCAGCAGGCGGAUACA_
.......((((((((((.((((((.....(((....)))..))))))..................((.((.......))))...........)))))))))).... (-21.52 = -22.08 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:02 2006