Locus 2476

Sequence ID 2R_DroMel_CAF1
Location 8,884,482 – 8,884,572
Length 90
Max. P 0.836179
window4090

overview

Window 0

Location 8,884,482 – 8,884,572
Length 90
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 76.85
Mean single sequence MFE -19.37
Consensus MFE -9.98
Energy contribution -9.31
Covariance contribution -0.66
Combinations/Pair 1.29
Mean z-score -2.05
Structure conservation index 0.52
SVM decision value 0.73
SVM RNA-class probability 0.836179
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8884482 90 + 20766785
GUUACUAAUUUUGUGGACAUGUAAAAGUUGCAU--UCGUAC----------------CAAGCAAAUGCAGUAAAAUGUCCGACAAACUCAAAUUGGAAUAC-ACAAAAU
....((((((((((((((((.......((((((--(.((..----------------...)).)))))))....)))))).))).....))))))).....-....... ( -19.30)
>DroPse_CAF1 143075 92 + 1
GUUACUAAUUUUGUAGACAUGUAAAAGUUGCGUCUUCCGUC----------------C-AGGAAGAGCUAUAAAAUGUUUGCCAAACUCAAAUUGAAAUGCUGCAAAAU
.......(((((((((.((((((((.(((((.((((((...----------------.-.)))))))).....))).))))).....((.....)).)))))))))))) ( -20.60)
>DroEre_CAF1 130709 90 + 1
GUUACUAAUUUUGUGGACAUGUAAAAGUUGCAU--UCGUCC----------------CAAGGAAAUGCAGUAAAAUGUCCAACAAACUCAAAUUNNNNNNN-NNNNNNN
.........(((((((((((.......((((((--(..(((----------------...))))))))))....)))))).)))))...............-....... ( -17.70)
>DroYak_CAF1 134256 90 + 1
GUUACUAAUUUUGUGGACAUGUAAAAGUUGCAU--UCGUCC----------------CAAGCAAAUGCAGUAAAAUGUCCAACAAACUCAAAUUGGAAUAC-ACAGAAU
....((((((((((((((((.......((((((--(.((..----------------...)).)))))))....)))))).))).....))))))).....-....... ( -19.00)
>DroAna_CAF1 128590 106 + 1
GUUACUAAUUUUGUGGACAUGUAAAAGUUGCAU--GCCACCUCCCCGCACAACCUUGCAACCAAAUGCAGUAAAAUGUCCGUCAAACUCAAAUUGAAAUAC-ACAAAAU
.(((((.((((.((((.((((((.....)))))--)))))......(((......)))....))))..)))))..(((...((((.......))))...))-)...... ( -19.00)
>DroPer_CAF1 146902 92 + 1
GUUACUAAUUUUGUAGACAUGUAAAAGUUGCGUCUUCCGUC----------------C-AGGAAGAGCUAUAAAAUGUUUGCCAAACUCAAAUUGAAAUGCUGCAAAAU
.......(((((((((.((((((((.(((((.((((((...----------------.-.)))))))).....))).))))).....((.....)).)))))))))))) ( -20.60)
>consensus
GUUACUAAUUUUGUGGACAUGUAAAAGUUGCAU__UCCUCC________________CAAGCAAAUGCAGUAAAAUGUCCGACAAACUCAAAUUGAAAUAC_ACAAAAU
.........(((((((((((.......((((((...............................))))))....))))))).))))....................... ( -9.98 =  -9.31 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:01 2006