Locus 2475

Sequence ID 2R_DroMel_CAF1
Location 8,880,822 – 8,880,921
Length 99
Max. P 0.975589
window4089

overview

Window 9

Location 8,880,822 – 8,880,921
Length 99
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.93
Mean single sequence MFE -26.23
Consensus MFE -14.58
Energy contribution -14.33
Covariance contribution -0.25
Combinations/Pair 1.25
Mean z-score -2.36
Structure conservation index 0.56
SVM decision value 1.75
SVM RNA-class probability 0.975589
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8880822 99 - 20766785
----GCUCUCCUAAAAUAUUGGUUUAGAUUGUGUCAAACAAAUUGAAUUUGCGAUUU-UAUGAUGAAUC-CAAACGAUAGCUCG--AGGGCU----UAGCUCAAUGG------AGCC---
----((((((......(((((((((((.((((.....)))).))))))(((.(((((-......)))))-))).)))))....)--))))).----..((((....)------))).--- ( -25.20)
>DroPse_CAF1 139654 103 - 1
----UCUUUGCUAAAAUAUUGGUUUAGAUUGUGUCAAACAAAUUGAAUUUGCGAUUU-GAUGAUGGAUC-CAAACGAUAGCCGA--AAGGCA------ACCAAAAGGACAUGAAGUU---
----(((..(((((....)))))..)))(..((((...(((((((......))))))-)....((((((-.....))).(((..--..))).------.)))....))))..)....--- ( -27.40)
>DroGri_CAF1 158441 95 - 1
CUGCGUUCUGCUAAAAUAUUGGUUUAGAUUGUGUCAAACAAAUUGAAUUUGCAAUUUUUUUGAUGAAUCCCAAAUCGUAGCGGUUGACGGCU----UUU---------------------
...((((((((((..((.((((....((((.(((((((.((((((......)))))).)))))))))))))))))..))))))..))))...----...--------------------- ( -23.60)
>DroYak_CAF1 130761 99 - 1
----GCGCUCCUAAAAUAUUGGUUUAGAUUGUGUCAAACAAAUUGAAUUUGCGAUUU-UAUGAUGAAUC-CAAACGAUAGCCCA--AGGGCU----UAGCUCAAUGG------AGCU---
----..(((((.....(((((((((((.((((.....)))).))))))(((.(((((-......)))))-))).)))))(((..--..))).----.........))------))).--- ( -26.20)
>DroAna_CAF1 125152 106 - 1
----CCUGUCCUAAAAUAUUGGUUUAGAUUGUGUCAAACAAAUUGAAUUUGCGAUUU-UAUGAUGAAUC-CGAACGAUAGCCCA--AGGGCUAUUUGAGUUGAAAGG------AGAGCUU
----.((.((((.........(((..((((.(((((...((((((......))))))-..)))))))))-..)))(((((((..--..))))))).........)))------).))... ( -27.60)
>DroPer_CAF1 143471 103 - 1
----UCUUUGCUAAAAUAUUGGUUUAGAUUGUGUCAAACAAAUUGAAUUUGCGAUUU-GAUGAUGGAUC-CAAACGAUAGCCGA--AAGGCA------ACCAAAAGGACAUGAAGUU---
----(((..(((((....)))))..)))(..((((...(((((((......))))))-)....((((((-.....))).(((..--..))).------.)))....))))..)....--- ( -27.40)
>consensus
____GCUCUCCUAAAAUAUUGGUUUAGAUUGUGUCAAACAAAUUGAAUUUGCGAUUU_UAUGAUGAAUC_CAAACGAUAGCCCA__AGGGCU____UAGCUAAAAGG______AGCU___
................(((((.....((((.(((((...((((((......))))))...))))))))).....)))))((((....))))............................. (-14.58 = -14.33 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:00 2006