Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,878,410 – 8,878,501 |
Length | 91 |
Max. P | 0.593234 |
Location | 8,878,410 – 8,878,501 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 84.70 |
Mean single sequence MFE | -25.14 |
Consensus MFE | -16.44 |
Energy contribution | -16.84 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.11 |
Mean z-score | -1.87 |
Structure conservation index | 0.65 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.593234 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8878410 91 - 20766785 ACU--GUGUUUGUGCACUGCAGAGC--ACUGAAAGACCUCACUAU---------UCACACUACUGGCGGCGCCACCUAGCGACCGCUAGACGCAACUACUUUUC ..(--((((..((((........))--))................---------........((((((((((......))).)))))))))))).......... ( -25.70) >DroSec_CAF1 123250 95 - 1 ACUGUGUGUUUGUGCACUGCAGAGCGCACUGAAAGACCUCACUAU---------CCACACUACUGGCGGCGCCACCUAGCGACCGCUAGCCGCAACUACUUUUC ...(((((...((((.((....)).))))(((......)))....---------.)))))..((((((((((......))).)))))))............... ( -28.50) >DroSim_CAF1 123061 86 - 1 ACUGUGUGUUUGUGCACUGCAGAGCGCACUG---------ACUAU---------CCACACUACUGGCGGCGCCACCUAGCGACCGCUAGCCGCAACUACUUUUC ..((((.(((.((((.((....)).)))).)---------))...---------.))))...((((((((((......))).)))))))............... ( -27.80) >DroEre_CAF1 124736 91 - 1 ACU--GUGUUAGUGCACUUUAGAGC--ACUGAAAGACCUCACUAU---------CCACACUACUGCCAGCGCCACCUAGCGACCGCUAGCCGCAACUACUUUUC .((--...(((((((........))--))))).))..........---------..............(((....(((((....))))).)))........... ( -19.50) >DroYak_CAF1 127836 100 - 1 ACU--GUGUUAGUGCACUGUAGAGC--ACUAAGACCCCUCACUAUCUACACUAUCCACAGUACUGCCAGCGCCACCUAGCGACCGCUAGCCGCAACUACUUUUC (((--((((((((((........))--)))))((....))...............)))))).......(((....(((((....))))).)))........... ( -24.20) >consensus ACU__GUGUUUGUGCACUGCAGAGC__ACUGAAAGACCUCACUAU_________CCACACUACUGGCGGCGCCACCUAGCGACCGCUAGCCGCAACUACUUUUC .......((...(((....(((......)))...............................((((((((((......))).)))))))..)))...))..... (-16.44 = -16.84 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:59 2006