Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,877,754 – 8,877,857 |
Length | 103 |
Max. P | 0.563696 |
Location | 8,877,754 – 8,877,857 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 92.10 |
Mean single sequence MFE | -24.05 |
Consensus MFE | -20.17 |
Energy contribution | -20.11 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.04 |
Mean z-score | -1.68 |
Structure conservation index | 0.84 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.563696 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8877754 103 - 20766785 GUAAGUACAUAAAUUUGUGUUUAAAUUCAUUAAUGCCUCCGACUCGGCCUGUAUGGCAUUAAUUGAGCAUUUUAAUGGCGAAAUUACAACGCCUAACUGGCGC ((((...(((.((...(((((((.....(((((((((....((.......))..)))))))))))))))).)).)))......))))..((((.....)))). ( -24.20) >DroSec_CAF1 122607 103 - 1 GUAAGUACAUAAAUUUGUGUUUAAAUUCAUUAAUGCCUGCGACUCGGCCUGUAUGGCAUUAAUUGAGCAUUUUAAUGGCCAAAUUACAACGCCUAACUGGCGC ((((...(((.((...(((((((.....(((((((((((((........)))).)))))))))))))))).)).)))......))))..((((.....)))). ( -25.90) >DroSim_CAF1 122407 103 - 1 GUAAGUACAUAAAUUUGUGUUUAAAUUCAUUAAUGCCUGCGACUCGGCCUGUAUGGCAUUAAUUGAGCAUUUUAAUGGCCAAAUUACAACGCCUAACUGGCGC ((((...(((.((...(((((((.....(((((((((((((........)))).)))))))))))))))).)).)))......))))..((((.....)))). ( -25.90) >DroEre_CAF1 124081 103 - 1 GUAAGUACAUAAAUUUGUGUUUAAAUUCAUUAAUGCCUCCGACUCGCCCUGUAUGGCAUUAAUUGAGCAUUUUAAUGGCCAAAUUACAACGCCUAACUGGCGC ((((...(((.((...(((((((.....(((((((((....((.......))..)))))))))))))))).)).)))......))))..((((.....)))). ( -24.20) >DroYak_CAF1 127198 103 - 1 GUAAGUACAUAAAUUUGCGUUUAAAUUCAUUAAUGCCUCCGACUCGGCCUGCAUGGCAUUAAUUGAGCAUUUUAAUGGCCAAAUUACAACGCCUAACUGGCGC ((((...(((.((..(((........(((((((((((.(((...))).......)))))))).))))))..)).)))......))))..((((.....)))). ( -22.40) >DroAna_CAF1 122152 88 - 1 GUAAGUACAUAAAUUUGCGUGUAAAUUCAUUAAUGC---------------UCUGGCAUUAAUUGAGCAUUUUAAUGGCAGAAUUACAACGCCUAACUGGCGC ((((((......)))))).(((((.(((((((((((---------------....))))))))...((.........)).)))))))).((((.....)))). ( -21.70) >consensus GUAAGUACAUAAAUUUGUGUUUAAAUUCAUUAAUGCCUCCGACUCGGCCUGUAUGGCAUUAAUUGAGCAUUUUAAUGGCCAAAUUACAACGCCUAACUGGCGC ((((...(((.((..(((........(((((((((((.................)))))))).))))))..)).)))......))))..((((.....)))). (-20.17 = -20.11 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:58 2006