Locus 2470

Sequence ID	2R_DroMel_CAF1
Location	8,865,228 – 8,865,323
Length	95
Max. P	0.999796

overview

Window 9

Location	8,865,228 – 8,865,323
Length	95
Sequences	5
Columns	95
Reading direction	forward
Mean pairwise identity	98.11
Mean single sequence MFE	-19.02
Consensus MFE	-18.10
Energy contribution	-18.30
Covariance contribution	0.20
Combinations/Pair	1.00
Mean z-score	-2.72
Structure conservation index	0.95
SVM decision value	3.98
SVM RNA-class probability	0.999742
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8865228 95 + 20766785
GAACUCCUGCAUGCCAUAAAACUUUGUUGGCCAACAUUAGCCAUUGUUCCAUGGCCAAACAAUUUCAAACUCAUUAAAAAUUGAUUGGCAACCCA
...........(((((.......(((((((((((((........)))....))))).)))))........(((........))).)))))..... ( -19.40)
>DroSec_CAF1 110080 95 + 1
GAACUCCUGCAUGCCAUAAAACUUUGUUGGCCAACAUUAGCCAUUGUUCCAUGGCCAAACAAUUUCAAACUCAUUAAAAAUUGAUUGGCAACCCA
...........(((((.......(((((((((((((........)))....))))).)))))........(((........))).)))))..... ( -19.40)
>DroSim_CAF1 109924 95 + 1
GAACUCCUGCAUGCCAUAAAACUUUGUUGGCCAACAUUAGCCAUUGUUCCAUGGCCAAACAAUUUCAAACUCAUUAAAAAUUGAUUGGCAACCCG
...........(((((.......(((((((((((((........)))....))))).)))))........(((........))).)))))..... ( -19.40)
>DroEre_CAF1 111658 95 + 1
AAACUCCUGCAUGCCAUAAAACGUUGUUGGCCAACAUUAGCCAUUGUUCCAUGGCCAAACAAUUUCAAACUCAUUAAAAAUUGAUUGGCAACCCA
...........(((((......((((((((((((((........)))....))))).)))))).......(((........))).)))))..... ( -20.40)
>DroYak_CAF1 114337 95 + 1
AAACUCCUGCAUACCAUAAAACUUUGUUGGCCAACAUUAGCCAUUGUUCCAUGGCCAAACAAUUUCAAACUCAUUAAAAAUUGAUUGGCAACCCA
..............(((..(((.....((((........))))..)))..)))(((((.((((((............)))))).)))))...... ( -16.50)
>consensus
GAACUCCUGCAUGCCAUAAAACUUUGUUGGCCAACAUUAGCCAUUGUUCCAUGGCCAAACAAUUUCAAACUCAUUAAAAAUUGAUUGGCAACCCA
...........(((((.......(((((((((((((........)))....))))).)))))........(((........))).)))))..... (-18.10 = -18.30 +   0.20)

alignment

secondary structure

dotplot

Window 0

Location	8,865,228 – 8,865,323
Length	95
Sequences	5
Columns	95
Reading direction	reverse
Mean pairwise identity	98.11
Mean single sequence MFE	-27.20
Consensus MFE	-27.36
Energy contribution	-27.20
Covariance contribution	-0.16
Combinations/Pair	1.03
Mean z-score	-2.45
Structure conservation index	1.01
SVM decision value	4.10
SVM RNA-class probability	0.999796
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8865228 95 - 20766785
UGGGUUGCCAAUCAAUUUUUAAUGAGUUUGAAAUUGUUUGGCCAUGGAACAAUGGCUAAUGUUGGCCAACAAAGUUUUAUGGCAUGCAGGAGUUC
....(((((((.(((((((..........))))))).)))((((((((((..((((((....)))))).....))))))))))..))))...... ( -27.60)
>DroSec_CAF1 110080 95 - 1
UGGGUUGCCAAUCAAUUUUUAAUGAGUUUGAAAUUGUUUGGCCAUGGAACAAUGGCUAAUGUUGGCCAACAAAGUUUUAUGGCAUGCAGGAGUUC
....(((((((.(((((((..........))))))).)))((((((((((..((((((....)))))).....))))))))))..))))...... ( -27.60)
>DroSim_CAF1 109924 95 - 1
CGGGUUGCCAAUCAAUUUUUAAUGAGUUUGAAAUUGUUUGGCCAUGGAACAAUGGCUAAUGUUGGCCAACAAAGUUUUAUGGCAUGCAGGAGUUC
....(((((((.(((((((..........))))))).)))((((((((((..((((((....)))))).....))))))))))..))))...... ( -27.60)
>DroEre_CAF1 111658 95 - 1
UGGGUUGCCAAUCAAUUUUUAAUGAGUUUGAAAUUGUUUGGCCAUGGAACAAUGGCUAAUGUUGGCCAACAACGUUUUAUGGCAUGCAGGAGUUU
....(((((((.(((((((..........))))))).)))((((((((((..((((((....)))))).....))))))))))..))))...... ( -27.60)
>DroYak_CAF1 114337 95 - 1
UGGGUUGCCAAUCAAUUUUUAAUGAGUUUGAAAUUGUUUGGCCAUGGAACAAUGGCUAAUGUUGGCCAACAAAGUUUUAUGGUAUGCAGGAGUUU
....(((((((.(((((((..........))))))).)))((((((((((..((((((....)))))).....))))))))))..))))...... ( -25.60)
>consensus
UGGGUUGCCAAUCAAUUUUUAAUGAGUUUGAAAUUGUUUGGCCAUGGAACAAUGGCUAAUGUUGGCCAACAAAGUUUUAUGGCAUGCAGGAGUUC
....(((((((.(((((((..........))))))).)))((((((((((..((((((....)))))).....))))))))))..))))...... (-27.36 = -27.20 +  -0.16)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:52 2006