Locus 247

Sequence ID 2R_DroMel_CAF1
Location 1,631,102 – 1,631,202
Length 100
Max. P 0.779108
window531

overview

Window 1

Location 1,631,102 – 1,631,202
Length 100
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 79.26
Mean single sequence MFE -30.64
Consensus MFE -19.80
Energy contribution -20.56
Covariance contribution 0.76
Combinations/Pair 1.28
Mean z-score -1.83
Structure conservation index 0.65
SVM decision value 0.55
SVM RNA-class probability 0.779108
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1631102 100 + 20766785
CCGAGGUUCUGCUCGCU------UCUGGCGGUGUUUUGUGCAGUUUCG----------UGGUGGA----GCUAGUAUUUUUUGCGCACUUGUUUGCGUUCAAAAUACAUUUUCGCCCGAA
.(((((..(((((....------...)))))..)))))......((((----------.((((((----(...(((((((..(((((......)))))..)))))))..))))))))))) ( -30.40)
>DroPse_CAF1 42756 120 + 1
GCGGACUUCUUUUCGCUCUUCACUCUUGCUGUGUGAUGCACUUUUUCGGUAUGUACUCUGGUAGUAUUUUCUAGUAUUUUUUGCGCACCUGCUUGCGUUCAAAAUACAUCUUCGCGCGCU
(((((......)))))...........((.((((((...(((...((((........)))).)))........(((((((..(((((......)))))..)))))))....)))))))). ( -29.20)
>DroSec_CAF1 16920 100 + 1
CCGAGGUUCUGCUCACU------UGUGGCGGUGUUAUGUGGAUUUUCG----------UGGUGGA----GCUAGUAUUUUUUGCGCACUUGCUUGCGUUCAAAAUACAUUUUUGCCCGAA
(((.....((((.((..------..)))))).......)))...((((----------.((..((----(...(((((((..(((((......)))))..)))))))..)))..)))))) ( -29.20)
>DroSim_CAF1 15357 100 + 1
CCGAGGUUCUGCUCACU------UGCGGCGGUGUUUUGUGGAAUUUCG----------UGGUGGA----GCUAGUAUUUUUUGCGCACUUGCUUGCGUUCAAAAUACAUUUUCGCCCGAA
.((((((((..(.((((------......))))....)..))))))))----------.((((((----(...(((((((..(((((......)))))..)))))))..))))))).... ( -34.10)
>DroEre_CAF1 19420 100 + 1
UCGAGGUUCUGCUCACU------UCUGGCGCUGUUUUGUGGAGUUUUG----------UGGCGGA----GCUAGUAUUUUUUGCGCACUUGCUUGCGUUCAAAAUACAUUUUUGCCCGGA
(((.((((((((.(((.------.((..(((......))).))....)----------)))))))----))).(((((((..(((((......)))))..))))))).........))). ( -30.30)
>consensus
CCGAGGUUCUGCUCACU______UCUGGCGGUGUUUUGUGGAGUUUCG__________UGGUGGA____GCUAGUAUUUUUUGCGCACUUGCUUGCGUUCAAAAUACAUUUUCGCCCGAA
.(((((((((((.(((..............)))....)))))))))))...........((((((........(((((((..(((((......)))))..)))))))...)))))).... (-19.80 = -20.56 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:28 2006