| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,860,062 – 8,860,166 |
| Length | 104 |
| Max. P | 0.550336 |
| Location | 8,860,062 – 8,860,166 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 84.40 |
| Mean single sequence MFE | -26.90 |
| Consensus MFE | -16.52 |
| Energy contribution | -19.13 |
| Covariance contribution | 2.61 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.92 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.550336 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8860062 104 + 20766785 UUUUCAAAAAUAUGAAAAGACAGGCCCAUAAAAAAGCGAAAGUGAAACAGAUUAUGG-CUGUCAUAGAUGGUAAUUUAUGGGGCCAUGACUUCAACUGCCAUACA-- ((((((......))))))....(((..........((....))......((((((((-((.((((((((....))))))))))))))))..))....))).....-- ( -26.10) >DroSec_CAF1 104937 104 + 1 UUUUCAAAAAUAUGAAAAGGCAGGCCCAUAAAAAAGCGAAAGUGAAACAGAUUAUGG-CUGUCAUAGAUGGUAAUUUAUGGGGGCAUGGCUUCAACUGCCAUACA-- ((((((......))))))(((((((((((((....((....))........)))))(-((.((((((((....)))))))).)))..))).....))))).....-- ( -30.60) >DroSim_CAF1 104849 104 + 1 UUUUCAAAAAUAUGAAAAGGCAGGCCCAUAAAAAAGAGAAAGUGAAACAGAUUAUGG-CUGUCAUAGAUGGUAAUUUAUGGGGCCAUGGCUUCAACUGCCAUGCA-- ((((((......)))))).((.(((((...................((((.......-))))(((((((....))))))))))))(((((.......))))))).-- ( -29.80) >DroEre_CAF1 106629 106 + 1 UUUUCAAAAAUAUGAAAAGGCAGGCCCAUAAAAAAGCGAAAGUGAAACAGAUUAUGG-CUGUCAUAGAUGGUUAUUUAUGGGGCCAUGGCUUCAACUGCCAUACAGC ((((((......))))))(((((.((((((((...((....))...........(((-(((((...))))))))))))))))((....)).....)))))....... ( -31.60) >DroYak_CAF1 108973 106 + 1 UUUUCAAAAAUAUGAAAAGGCAGGCCCAUAAAAAAGCGAAAGUGAAACAGAUUAUGG-CUGUCAUAGAUGGUAAUUUAUGGGGCCAUGGCUUCAACUGCCACACAGC ((((((......))))))(((((............((....)).....((.((((((-((.((((((((....))))))))))))))))))....)))))....... ( -30.70) >DroPer_CAF1 120371 81 + 1 UUUAAAAGA---------------GCAAUAU-AAAACGAGAGUGAAACAGAUUAUGGCCUGUCAUAGAUGGCAAUUUAUGGG-------CAUUAGAUGGCAUU-A-- .........---------------((.....-...((....))....((.......(((...(((((((....)))))))))-------)......))))...-.-- ( -12.62) >consensus UUUUCAAAAAUAUGAAAAGGCAGGCCCAUAAAAAAGCGAAAGUGAAACAGAUUAUGG_CUGUCAUAGAUGGUAAUUUAUGGGGCCAUGGCUUCAACUGCCAUACA__ ((((((......))))))....(((((........((....))...((((........))))(((((((....))))))))))))(((((.......)))))..... (-16.52 = -19.13 + 2.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:48 2006