Locus 2466

Sequence ID 2R_DroMel_CAF1
Location 8,855,813 – 8,855,912
Length 99
Max. P 0.630734
window4072

overview

Window 2

Location 8,855,813 – 8,855,912
Length 99
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 92.65
Mean single sequence MFE -19.77
Consensus MFE -18.29
Energy contribution -18.45
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.06
Structure conservation index 0.92
SVM decision value 0.20
SVM RNA-class probability 0.630734
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8855813 99 - 20766785
CCCCC-CCCCAUCG--------ACCACGCCCCUUUCUAUGGGCUAAGCCAAACAAUGGCGACAAACAAUUGAAAUCUGUGCGCUUUGUUUUAGGCCACCGCAUAUCCA
.....-.....(((--------(....((((........))))...((((.....)))).........)))).....(((.((((......))))))).......... ( -19.60)
>DroSec_CAF1 100669 97 - 1
CCUCC-CCCCUUCG--------ACCACGCCCCUUUCAAUGGGCUAAGCCAAACAAUGGCGACAAACAAUUGAAAUCUGUGCGCUUUGUUUUAGGCCACCGCA--UCCA
.....-....((((--------(....((((........))))...((((.....)))).........)))))....(((.((((......)))))))....--.... ( -20.30)
>DroSim_CAF1 100594 97 - 1
CCUCC-CCCCUUCG--------ACCACGCCCCUUUCAAUGGGCUAAGCCAAACAAUGGCGACAAACAAUUGAAAUCUGUGCUCUUUGUUUUAGGCCACCGCA--UCCA
.....-........--------.....((((........))))...(((((((((.(((.(((.............))))))..))))))..))).......--.... ( -17.12)
>DroEre_CAF1 102245 98 - 1
CCCACCCCCCAUCG--------ACCACGCCCCUUUCAAUGGGCUAAGCCAAACAAUGGCGACAAACAAUUGAAAUCUGUGCGCUUUGUUUUAGGCCACCGCA--UCCA
...........(((--------(....((((........))))...((((.....)))).........)))).....(((.((((......)))))))....--.... ( -19.60)
>DroYak_CAF1 104516 97 - 1
CCCAC-CCCCAUCG--------ACCACGCCCCUUUCAAUGGGCUAAGCCAAACAAUGGCGACAAACAAUUGAAAUCUGUGCGCUUUGUUUUAGGCCACCGCA--UCCA
.....-.....(((--------(....((((........))))...((((.....)))).........)))).....(((.((((......)))))))....--.... ( -19.60)
>DroAna_CAF1 99515 105 - 1
CGUCC-ACCCUUCACCCUCCAUGCCACGCCCCUUUCAAUGGGCUAAGCCAAACAAUGGCGACAAACAAUUGAAAUCUGUGCGCUUUGUUUUAGGCCACCGCA--UCCA
.....-..............((((...((((........))))...(((((((((.(((((((.............))).))))))))))..)))....)))--)... ( -22.42)
>consensus
CCCCC_CCCCAUCG________ACCACGCCCCUUUCAAUGGGCUAAGCCAAACAAUGGCGACAAACAAUUGAAAUCUGUGCGCUUUGUUUUAGGCCACCGCA__UCCA
...........................((((........))))...(((((((((.(((((((.............))).))))))))))..)))............. (-18.29 = -18.45 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:44 2006