Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,855,070 – 8,855,171 |
Length | 101 |
Max. P | 0.568763 |
Location | 8,855,070 – 8,855,171 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 78.22 |
Mean single sequence MFE | -32.67 |
Consensus MFE | -14.27 |
Energy contribution | -16.47 |
Covariance contribution | 2.20 |
Combinations/Pair | 1.22 |
Mean z-score | -2.19 |
Structure conservation index | 0.44 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.568763 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8855070 101 - 20766785 ACCGGGUUAAGGGUCUUCAAAAAGGGUUUUUAGCGCACAGAGUGCGGUUAGAGCUUUUGAGUGGGGCAACUUGG-----CCUGGUGUGGCGAAUGCUAUUCGAGUU (((((((((((...(((((..(((((((((.(.(((((...))))).).)))))))))...)))))...)))))-----))))))(((((....)))))....... ( -39.20) >DroSec_CAF1 99948 100 - 1 ACCGGGUUAAGGGUCUUCAAAAAGGGUUUUUAGCGCACAGAGUGCGGUUAGAGCUUUUGAGUGG-GCAACUUGG-----CCUGGUGUGGCGAAUGUGAUUCGAGUU (((((((((((.((((.....(((((((((.(.(((((...))))).).)))))))))....))-))..)))))-----))))))....(((((...))))).... ( -36.00) >DroSim_CAF1 99877 100 - 1 ACCGGGUUAAGGGUCUUCAAAAAGGGUUUUUAGCACACAGAGUGCGGUUAGAGCUUUUGAGUGG-CCAACUUGG-----CCUGGUGUGGCGAAUGUGAUUCGAGUU (((((((((((((((((((((...((((((..((((.....))))....)))))))))))).))-))..)))))-----))))))....(((((...))))).... ( -35.70) >DroEre_CAF1 101556 99 - 1 ACCGGGUUAAGGGUCCUCGAAAGGGGUUUCCAGCGCAAAGAGUGCGGUUAGAGCUUUUGAGUGG-GCAACUUGG------CUGGUGUGGCAAAUGUGAUUCGAGUU ..(((((((.(((.((((....))))..))).((((.....)))).((((.(.(..(..(((..-...)))..)------..).).)))).....))))))).... ( -30.50) >DroYak_CAF1 103784 105 - 1 ACCGGAUUGAGGGUCCUCAGAAAGGGUUUUUAGCGCAAGGAGUGCGGUUAGAGCUUUUGAGUGG-CCAAAUGGUCUGGAUCUGGUGUAGCGAAUGUGAUUCGAGUU ((((((((.((((((((((((...((((((.(.((((.....)))).).)))))))))))).))-)).......)).))))))))....(((((...))))).... ( -33.81) >DroAna_CAF1 98742 81 - 1 ACCGGGUUAAGGGUCUCCAAAAAAAGGCCUCUCCACAGUAGAAGCCUUU---GCUUUUCAG------AACUU--------CUGGUA--------GUGGUUCGAGGU .((.......))..............(((((.(((((.((((((..(((---(.....)))------).)))--------))).).--------))))...))))) ( -20.80) >consensus ACCGGGUUAAGGGUCUUCAAAAAGGGUUUUUAGCGCACAGAGUGCGGUUAGAGCUUUUGAGUGG_GCAACUUGG_____CCUGGUGUGGCGAAUGUGAUUCGAGUU (((((((((((.....(((..(((((((((..((((.....))))....)))))))))...))).....))))).....))))))..................... (-14.27 = -16.47 + 2.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:43 2006