Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,841,437 – 8,841,553 |
Length | 116 |
Max. P | 0.528716 |
Location | 8,841,437 – 8,841,553 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.00 |
Mean single sequence MFE | -14.92 |
Consensus MFE | -12.78 |
Energy contribution | -12.60 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.07 |
Mean z-score | -1.37 |
Structure conservation index | 0.86 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.528716 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8841437 116 + 20766785 UCUUAUUUAUUUAUAUGGCUUAUUUACCUGCAACAAUUUGCAUACUAAUGCGCUGCAAAAGGUUAUCCUUGCCACAUACCAACACACAC----ACACACACAGCUCAGAACUCACAACUC ...........(((.((((.........((((......(((((....))))).)))).((((....)))))))).)))...........----........................... ( -13.80) >DroSim_CAF1 85449 114 + 1 UCUUAUUUAUUUAUAUGGCUUAUUUACCUGCAACAAUUUGCAUACUAAUGCGCUGCAAAAGGUUAUCCUUGCCGCACACCAACACACA------CACACACAGCUCAGAACUCACAACUC ...............(((((........(((((....)))))......((.((.(((..(((....)))))).)).))..........------.......))).))............. ( -15.10) >DroEre_CAF1 88095 94 + 1 UCUUAUUUAUUUAUAUGGCUUAUUUACCUGCAACAAUUUGCAUACUAAUGCACUGCAAAAGGUUAUCCUUGCCGCACACCAACACACAC--------------------------AACUC ................(((.........((((......(((((....))))).)))).((((....)))))))................--------------------------..... ( -13.20) >DroYak_CAF1 89133 120 + 1 UCUUAUUUAUUUAUAUGGCUUAUUUACCUGCAACAAUUUGCAUACUAAUGCUCUGCAAAAGGUUAUCCUUGCCGCACACCAACACACACGAGCACACACACAGCUCACAACUUGCAACUC ............................(((((......((((....))))..(((..((((....))))...))).............((((.........)))).....))))).... ( -17.60) >consensus UCUUAUUUAUUUAUAUGGCUUAUUUACCUGCAACAAUUUGCAUACUAAUGCGCUGCAAAAGGUUAUCCUUGCCGCACACCAACACACAC_____CACACACAGCUCAGAACUCACAACUC ...............((((......((((((((....)))).......(((...)))..)))).......)))).............................................. (-12.78 = -12.60 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:38 2006