Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,837,279 – 8,837,371 |
Length | 92 |
Max. P | 0.732022 |
Location | 8,837,279 – 8,837,371 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 73.77 |
Mean single sequence MFE | -15.14 |
Consensus MFE | -3.03 |
Energy contribution | -5.19 |
Covariance contribution | 2.16 |
Combinations/Pair | 1.06 |
Mean z-score | -1.69 |
Structure conservation index | 0.20 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.732022 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8837279 92 + 20766785 ACAUACAUAU----A--------UGUACAUAUCGAAGUUAUGUGGGGACACAUAAAACAUCCAACCGCAAAACAUAUUAAAUUUAUUAUCAAUAAAUUUUCAUU (((((....)----)--------))).......(((.(((((((....)))))))........................(((((((.....))))))))))... ( -13.40) >DroPse_CAF1 92684 77 + 1 GAG----UAU----G--------UGUU------GGG-----GGGUGGGCACAUAAAACAUGCAACCACAAAACAUAUUACAUUUAUUAUCAAUAAAUUUUCAUU .((----(((----(--------(.((------(..-----.(((..(((.........))).))).))).))))))).......................... ( -13.60) >DroEre_CAF1 84109 98 + 1 ACAUACAGAUGUACAUGCCAAAUCGUA------GAAGUUAUGUGGGGACACAUAAAACAUCCAACCGCAAAACAUAUUAAAUUUAUUAUCAAUAAAUUUUCAUU .......(((((...(((......)))------....(((((((....))))))).))))).................((((((((.....))))))))..... ( -15.90) >DroYak_CAF1 85082 94 + 1 AUGU----AUGUAUACGACUAUAGGUU------GAAGUUAUGUGGGGACACAUAAAACAUCCAACCGCAAAACAUAUUAAAUUUAUUAUCAAUAAAUUUUCAUU ..((----(((((((....))).((((------(...(((((((....)))))))......))))).....)))))).((((((((.....))))))))..... ( -19.20) >DroPer_CAF1 95764 77 + 1 GAG----UAU----G--------UGUU------GGG-----GGGUGGGCACAUAAAACAUGCAACCACAAAACAUAUUACAUUUAUUAUCAAUAAAUUUUCAUU .((----(((----(--------(.((------(..-----.(((..(((.........))).))).))).))))))).......................... ( -13.60) >consensus AAGU___UAU____A________UGUU______GAAGUUAUGUGGGGACACAUAAAACAUCCAACCGCAAAACAUAUUAAAUUUAUUAUCAAUAAAUUUUCAUU ........................((...........(((((((....)))))))...........))..........((((((((.....))))))))..... ( -3.03 = -5.19 + 2.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:33 2006