| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,835,680 – 8,835,784 |
| Length | 104 |
| Max. P | 0.738152 |
| Location | 8,835,680 – 8,835,784 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 82.54 |
| Mean single sequence MFE | -28.63 |
| Consensus MFE | -20.99 |
| Energy contribution | -21.43 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.738152 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8835680 104 - 20766785 CAUGGUGGCUCCACUUCGCCAAAGUGGAGCUGCACUUGCACUUGCACUUCAACGCUUCGGUCGAGUGCCAUCGAGCAAUCGAUGGACAAUGCCGAACAAAGACA ....(..(((((((((.....)))))))))..)...(((....))).......(.((((((....(((((((((....))))))).))..)))))))....... ( -42.10) >DroPse_CAF1 90854 79 - 1 -------------------------UGAGCUGCACUUGCACUUGCACUUCACUGCUUUAGUCGAGUGUUAUCAGGUAAUCGAUGGACAAUGCGGAACAAAGACA -------------------------((..(((((((((.(((.(((......)))...)))))))(((((((........))).)))).)))))..))...... ( -16.80) >DroSim_CAF1 82353 90 - 1 CAUGG--------------CAAAGUGGAGCUGCACUUGCACUUGCACUUCAACGCUUCGGUCGAGUGCCAUCGAGCAAUCGAUGGACAAUGCCGAACAAAGACA ..(((--------------(((((((.((.(((....))).)).)))))...(((....).)).((.(((((((....)))))))))..))))).......... ( -31.40) >DroEre_CAF1 82381 90 - 1 CAUGG--------------CAAAGUGGAGCUGCACUUGCACUUGCACUUCAGCGCUUCGGUCGAGUGCCAUCGAGCAAUCGAUGGACAAUGCCGAACAAAGACA ....(--------------(.(((((.((.(((....))).)).)))))..))(.((((((....(((((((((....))))))).))..)))))))....... ( -32.10) >DroYak_CAF1 83377 90 - 1 CAUGG--------------CAAAGUGGAGCUGCACUUGCACUUGCACUUCAACGCUUCGGUCGAGUGCCAUCGAGCAAUCGAUGGACAAUGCCGAACAAAGACA ..(((--------------(((((((.((.(((....))).)).)))))...(((....).)).((.(((((((....)))))))))..))))).......... ( -31.40) >DroPer_CAF1 93952 79 - 1 -------------------------UGAGCUGCACUUGCACUUGCACUUCACUGCUUUAGUCGAGUGUUAUCAGGCAAUCGAUGGACAAUGCGGAACAAAGACA -------------------------((((.((((........)))).))))((((....(((((.((((....)))).))))).......)))).......... ( -18.00) >consensus CAUGG______________CAAAGUGGAGCUGCACUUGCACUUGCACUUCAACGCUUCGGUCGAGUGCCAUCGAGCAAUCGAUGGACAAUGCCGAACAAAGACA ........................(((((.((((........)))))))))..(.((((((....(((((((((....))))))).))..)))))))....... (-20.99 = -21.43 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:32 2006