Locus 2456

Sequence ID 2R_DroMel_CAF1
Location 8,831,340 – 8,831,455
Length 115
Max. P 0.948918
window4056

overview

Window 6

Location 8,831,340 – 8,831,455
Length 115
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 93.62
Mean single sequence MFE -32.56
Consensus MFE -26.15
Energy contribution -27.67
Covariance contribution 1.53
Combinations/Pair 1.03
Mean z-score -3.26
Structure conservation index 0.80
SVM decision value 1.39
SVM RNA-class probability 0.948918
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8831340 115 + 20766785
CAAGU----UGCAUGCGCUUAAUGCAAAUCCUUGAAACCACUUGCGGCCCACUCGAAAUUUUUAAUUUUUCCCACAAAAGCCGCACUCGACA-GAACUCGAGGCGCAUCAACAUCAACUG
...((----((.((((((........................((((((......((((.........))))........))))))(((((..-....)))))))))))))))........ ( -30.44)
>DroPse_CAF1 84965 120 + 1
CGAGUUGGUUGCAUGCGCUUAAUGCAAAUCCUUGAAACCACUUGCGGCCCACUCGAAAUUUUUAAUUUUUCCCACAAAAGCCGCACUCGACGGGAACUCGAGGCGCAUCAACAUCAACCA
.(.((((((((.((((((........................((((((......((((.........))))........))))))(((((.(....))))))))))))))))..))))). ( -34.24)
>DroGri_CAF1 89346 115 + 1
CGAGUUGGUUGCAUUCGCUUAAUGCAAAUCCUUGAAACCACUUGCGGCCCACUCGAAAUUUUUAAUUUUUCCCACAAAAGCCGCACUCGACA-GAACUCGAGGCGCAUCAAC--CAAC--
...((((((((.((.(((........................((((((......((((.........))))........))))))(((((..-....)))))))).))))))--))))-- ( -30.64)
>DroMoj_CAF1 93880 115 + 1
CAAGUUGGUUGCAUGCGCUUAAUGCAAAUCCUUGAAACCACUUGCGGCCCACUCGAAAUUUUUAAUUUUUCCCACAAAAGCCGCACUCGACA-GAACUCGAGGCGCAUCAAC--CAAA--
....(((((((.((((((........................((((((......((((.........))))........))))))(((((..-....)))))))))))))))--))).-- ( -35.34)
>DroAna_CAF1 75837 115 + 1
CAAGU----UGCAUGCGCUUAAUGCAAAUCCUUGAAACCACUUGCGGCCCACUCGAAAUUUUUAAUUUUUCCCACAAAAGCCGCACUCGACA-GAACUCGAGGCGCAUCAACAUCAGCAU
...((----((.((((((........................((((((......((((.........))))........))))))(((((..-....)))))))))))))))........ ( -30.44)
>DroPer_CAF1 88043 120 + 1
CGAGUUGGUUGCAUGCGCUUAAUGCAAAUCCUUGAAACCACUUGCGGCCCACUCGAAAUUUUUAAUUUUUCCCACAAAAGCCGCACUCGACGGGAACUCGAGGCGCAUCAACAUCAACCA
.(.((((((((.((((((........................((((((......((((.........))))........))))))(((((.(....))))))))))))))))..))))). ( -34.24)
>consensus
CAAGUUGGUUGCAUGCGCUUAAUGCAAAUCCUUGAAACCACUUGCGGCCCACUCGAAAUUUUUAAUUUUUCCCACAAAAGCCGCACUCGACA_GAACUCGAGGCGCAUCAACAUCAAC__
...((((((((.((((((........................((((((......((((.........))))........))))))(((((.......)))))))))))))))..)))).. (-26.15 = -27.67 +   1.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:29 2006