Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,825,751 – 8,825,849 |
Length | 98 |
Max. P | 0.603297 |
Location | 8,825,751 – 8,825,849 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 88.44 |
Mean single sequence MFE | -19.23 |
Consensus MFE | -17.70 |
Energy contribution | -18.03 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.38 |
Structure conservation index | 0.92 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.603297 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8825751 98 + 20766785 GUCCUACUUAUUCAAAUAUCUCUCAUAUUCUUCAAGUAUUAUUUAGAGGUUUUGUGCGGUUUUUGGAAACGAGAACGCACUGCAAUCCACCUUUAGAA ....(((((.....(((((.....)))))....)))))...(((((((((...(((((.((((((....)))))))))))........))))))))). ( -23.30) >DroSec_CAF1 70593 98 + 1 GUCCUACUUAUUCAAAUAUCUCUCAGAUUCUUCAAAUAUUUUUUAGAGGUUUUGUGCGGUUUUUGGAAUCGAGAACGCACUGCAAUCCACCUUUAGAA ........................................((((((((((...(((((.((((((....)))))))))))........)))))))))) ( -17.80) >DroSim_CAF1 72954 94 + 1 GCCAUACUUUU----AUAUCUCUCAUACCCUUCAAAUUUGUUUUAGAGAUUUUCUGCGGUUUUUGGAAACGAGAACGCACUGCAAUCCACCUUUAGAA ((.........----..((((((...((...........))...))))))....((((.((((((....))))))))))..))............... ( -16.60) >consensus GUCCUACUUAUUCAAAUAUCUCUCAUAUUCUUCAAAUAUUUUUUAGAGGUUUUGUGCGGUUUUUGGAAACGAGAACGCACUGCAAUCCACCUUUAGAA .........................................(((((((((....(((((((((((....)))))....))))))....))))))))). (-17.70 = -18.03 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:28 2006