Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,824,567 – 8,824,660 |
Length | 93 |
Max. P | 0.531787 |
Location | 8,824,567 – 8,824,660 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 80.28 |
Mean single sequence MFE | -22.44 |
Consensus MFE | -8.95 |
Energy contribution | -9.07 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.17 |
Mean z-score | -2.67 |
Structure conservation index | 0.40 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.531787 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8824567 93 - 20766785 AAUAA--AAUAAACAAACAAGAC----------UGGGGCGAAUUGAAAAAACUUUUAAUCUCUGUCUCCAAGCGGAAACACACAGCUCAGUGCUGAUUUUCCAGA .....--.............(..----------(((((((((((((((....))))))).)).))).)))..)(((((....((((.....))))..)))))... ( -19.10) >DroPse_CAF1 77491 96 - 1 ----G--UCUAAGCAAACAAAACGCUUUGUCGCAGGGGAAAAUUGAAA-AA-UUUUAAUCUCUGUCGCAAAGCGGAAACACGCAGCUCAGCGAC-AGCAUCCAGC ----.--.....((........((((((((.(((((((((((((....-))-))))..))))))).))))))))......(((......)))..-.))....... ( -30.50) >DroSec_CAF1 69409 88 - 1 ----A--AAUAAACAAACAAGAC----------UGAGGCGAAUUGAAAAAA-UUUUAAUCUCUGUCGCCAAGCGGAAACACACAGCUCAGCGCUGAUUUUCCAGA ----.--...............(----------((.(((((...((.....-........))..)))))..(.(....).).((((.....))))......))). ( -17.62) >DroSim_CAF1 71776 92 - 1 AAUAA--AAUAAACAAACAAGAC----------UGGGGCGAAUUGAAAAAA-UUUUAAUCUCUGUCGCCAAGCGGAAACACACAGCUCAGCGCUGAUUUUCCAGA .....--...............(----------((((((((...((.....-........))..)))))..(.(....).).((((.....)))).....)))). ( -20.72) >DroEre_CAF1 71790 91 - 1 CAACA--AACAAACAAACAAGAC----------AGAGGAGAAUUGAAA-AA-UUUUAAUCUCUGUCGCCAAGCGGAAACACACAGCUCAGUGCUGAUGCCUCGGA .....--.............(((----------(((((((((((....-))-))))..)))))))).((..(((....)...((((.....))))..))...)). ( -25.20) >DroYak_CAF1 72172 94 - 1 CAACAACAACAAACAAACAAGAC----------GGAGGCGAAUUGAAAAAA-UUGUAAUCUCUGUCGCCAAGCGGAAACACACAGCGCAGUGCUGAUUGCUCAGA ....................(((----------((((((((.((....)).-))))...)))))))....((((....)...((((.....))))...))).... ( -21.50) >consensus _A__A__AAUAAACAAACAAGAC__________UGAGGCGAAUUGAAAAAA_UUUUAAUCUCUGUCGCCAAGCGGAAACACACAGCUCAGCGCUGAUUUUCCAGA ..................................(((.......................(((((......)))))......((((.....))))....)))... ( -8.95 = -9.07 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:27 2006