Locus 2453

Sequence ID 2R_DroMel_CAF1
Location 8,824,211 – 8,824,331
Length 120
Max. P 0.671436
window4053

overview

Window 3

Location 8,824,211 – 8,824,331
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 76.27
Mean single sequence MFE -27.90
Consensus MFE -13.96
Energy contribution -13.92
Covariance contribution -0.04
Combinations/Pair 1.25
Mean z-score -1.85
Structure conservation index 0.50
SVM decision value 0.29
SVM RNA-class probability 0.671436
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8824211 120 + 20766785
AUAAGUCUUAGGAUUUUUAUUGUUGUAGUUAAAUGGCCAGGGGAUAUUUGAAGGUAUGUGGCUUGCAACAUGUUUGAUCGAACAUUAAAAUACUCGCUAAAUAUCUGCAGCUUAAAAGUA
............(((((((..(((((((.((..((((.((..(((.((((((..(((((........)))))..)..))))).)))......)).))))..)).))))))).))))))). ( -23.80)
>DroSec_CAF1 69050 120 + 1
AUAAUUCUUAGGAUUUUUAUUGCUGCACUUAAAUUGCCAGGGGAUAGUUGAAAGUAUGUGGCUUGCAACAUGUUUGAUCGAACAUUAAAAUACUCGCUAAAUAUCUGCAGCUUAAAAGUA
............(((((((..((((((..((....((.((......((((.((((.....)))).))))((((((....)))))).......)).))....))..)))))).))))))). ( -26.50)
>DroSim_CAF1 71418 120 + 1
AUAAUUCUUAGGAUUUUUAUUGUUGCACUUAAAUUGCCAGUGGAUAGUUGAAAGUAUGUGGCUUGCAACAUGUUUGAUCGAACAUUAAAAUACUCGCUAAAUAUCUGCAGCUUAAAAGUA
............(((((((..((((((..((....((.((((....((((.((((.....)))).))))((((((....)))))).....)))).))....))..)))))).))))))). ( -26.10)
>DroEre_CAF1 71411 116 + 1
AUAUGUUCUGUGAUAAUUA--GCAGUACUUAGCUUG-CAAGAGAUAGUUGGAAGCC-CAAACUUCCAACAUGUUCGAUCGAACACACAGACACGCGCUAAGUAACUGCAGCUUAAAAGUA
...................--((((((((((((..(-(........((((((((..-....)))))))).(((((....))))).........))))))))).)))))............ ( -35.00)
>DroYak_CAF1 71844 99 + 1
-----------------UA--GUAGUGCUUAGAUUGACAAGUGAUAGUUGGAAGU--UAGGCUUCCAACAUGUUCGAUCGAACAUUAAGAUGCUCGCUUAUUAACUGCCGCUUAAAAGUA
-----------------..--..((((..(((.((((.((((((..((((((((.--....))))))))((((((....))))))........)))))).))))))).))))........ ( -28.10)
>consensus
AUAAGUCUUAGGAUUUUUAUUGUUGUACUUAAAUUGCCAGGGGAUAGUUGAAAGUAUGUGGCUUGCAACAUGUUUGAUCGAACAUUAAAAUACUCGCUAAAUAUCUGCAGCUUAAAAGUA
.....................((((((...................((((.((((.....)))).))))((((((....))))))....................))))))......... (-13.96 = -13.92 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:26 2006