Locus 2452

Sequence ID 2R_DroMel_CAF1
Location 8,824,057 – 8,824,171
Length 114
Max. P 0.944566
window4052

overview

Window 2

Location 8,824,057 – 8,824,171
Length 114
Sequences 3
Columns 115
Reading direction reverse
Mean pairwise identity 88.86
Mean single sequence MFE -30.40
Consensus MFE -26.12
Energy contribution -25.47
Covariance contribution -0.66
Combinations/Pair 1.16
Mean z-score -2.81
Structure conservation index 0.86
SVM decision value 1.35
SVM RNA-class probability 0.944566
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8824057 114 - 20766785
UUCUGUGCAUUUUUUUUUUACUAUUUUACGUAUAUAAUUGUGGCAACACUGAUGUUGACACUCGCUUGUCGACGCUU-UCUCUUGACUGCCCACAAUUGAUGUAUAGCUAGGCGC
..((((((((........(((........)))..(((((((((..........(((((((......)))))))((..-((....))..)))))))))))))))))))........ ( -27.50)
>DroEre_CAF1 71263 111 - 1
UUCUGA----CCAUUUUUUACUACUUUACAUAUAUAAUUGUGGCAUCACUGACGUUGACAGUCGCCUGUCGACGCUUUUCUCUUGACUGCCCACAAUUGAUGUAUAGCUAGGCGC
......----..........(((((.(((((...((((((((((((((..(((((((((((....)))))))))....))...))).)).)))))))))))))).)).))).... ( -31.30)
>DroYak_CAF1 71698 111 - 1
UUCAGU----CAAUUUUUUACUGCUUUACAUAUAUAAUUGUGGCAGCACUGACGUUGACAGUCGCUUGUCGACGCUUUUCCCUUGACUGCCCACAAUUGAUGUAUAGCUAGGCGC
......----..........(((((.(((((...((((((((((((((..(((((((((((....)))))))))....))...)).))).)))))))))))))).))).)).... ( -32.40)
>consensus
UUCUGU____CAAUUUUUUACUACUUUACAUAUAUAAUUGUGGCAACACUGACGUUGACAGUCGCUUGUCGACGCUUUUCUCUUGACUGCCCACAAUUGAUGUAUAGCUAGGCGC
....................(((((.(((((...(((((((((((.......(((((((((....)))))))))....((....)).)).)))))))))))))).)).))).... (-26.12 = -25.47 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:25 2006