Locus 2451

Sequence ID 2R_DroMel_CAF1
Location 8,823,079 – 8,823,174
Length 95
Max. P 0.936243
window4051

overview

Window 1

Location 8,823,079 – 8,823,174
Length 95
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 81.87
Mean single sequence MFE -26.88
Consensus MFE -21.63
Energy contribution -21.66
Covariance contribution 0.03
Combinations/Pair 1.04
Mean z-score -2.65
Structure conservation index 0.80
SVM decision value 1.25
SVM RNA-class probability 0.936243
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8823079 95 - 20766785
ACCACACU---------------ACCACCC-ACUGAAUGCAGCAG------UUUUUCGCACACUCGCGAUAAUUGCAGCCACAGCAGCAGAAGCGACACGAAAACUGUUGCAAUGCA
........---------------.......-......((((((((------((((.((.....((((.....((((.((....)).))))..))))..))))))))))))))..... ( -25.70)
>DroSec_CAF1 67930 88 - 1
ACCAC-----------------------CCAACUGAAUGCAGCAG------UUUUUCGCACACUCGCGAUAAUUGCAGCCACAGCAGCAGAAGCGACACGAAAACUGUUGCAAUGCA
.....-----------------------.........((((((((------((((.((.....((((.....((((.((....)).))))..))))..))))))))))))))..... ( -25.70)
>DroSim_CAF1 70255 87 - 1
ACCAC-----------------------CC-ACUGAAUGCAGCAG------UUUUUCGCACACUCGCGAUAAUUGCAGCCACAGCAGCAGAAGCGACACGAAAACUGUUGCAAUGCA
.....-----------------------..-......((((((((------((((.((.....((((.....((((.((....)).))))..))))..))))))))))))))..... ( -25.70)
>DroEre_CAF1 70292 88 - 1
----------------------AGCCGCCC-ACUGAAUGCAGCAG------UUUUUCGCACACUCGCGUUAAUUGCAGCCACAGCAGCAGAAGCGACACGAAAACUGUUGCAAUGCA
----------------------........-......((((((((------((((.((.....((((.....((((.((....)).))))..))))..))))))))))))))..... ( -25.70)
>DroYak_CAF1 70682 110 - 1
CCCACACUCAAACGCACCACCCAACCACCC-ACUGAAUGCAGCAG------UUCUUCGCACACUCGCGAUAAUUGCAGCCACAGCAGCAGAAGCGACACGAAAACUGUUGCAAUGCA
.............(((.........((...-..))..((((((((------((.((((.....((((.....((((.((....)).))))..))))..)))))))))))))).))). ( -27.00)
>DroAna_CAF1 67713 95 - 1
ACCACACU---------------U-------GCAGCUUGCAGCAGUGGCACUUUUUCGCACACUUGCGAUAAUUGCAGCCGCAGCGGCAGAAGCGACACGAAAACUGUUGCAAUGCA
........---------------.-------...((((((((((((.(((..((.(((((....))))).)).))).((((...))))...............)))))))))).)). ( -31.50)
>consensus
ACCAC_______________________CC_ACUGAAUGCAGCAG______UUUUUCGCACACUCGCGAUAAUUGCAGCCACAGCAGCAGAAGCGACACGAAAACUGUUGCAAUGCA
.....................................((((((((.......((((((.....((((.....((((.((....)).))))..))))..))))))))))))))..... (-21.63 = -21.66 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:24 2006