Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,630,097 – 1,630,217 |
Length | 120 |
Max. P | 0.544352 |
Location | 1,630,097 – 1,630,217 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 67.52 |
Mean single sequence MFE | -24.70 |
Consensus MFE | -13.56 |
Energy contribution | -16.88 |
Covariance contribution | 3.31 |
Combinations/Pair | 1.17 |
Mean z-score | -1.35 |
Structure conservation index | 0.55 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523035 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1630097 120 + 20766785 UUCAAGAAACUGAGCGAUAUAGAAUUUUACAAGGUCAUUAUUUUAAGAAAUAGGUAUAUGGUGAGGAUACGAGCUUAAGGAAACCCAUUUCGUACAACGACUUUGCGAAGCACAAAUAAU ((((......))))..........(((..(((((((.((((((....))))))((((((((((((........)))).(....)))))...))))...)))))))..))).......... ( -17.60) >DroSec_CAF1 15933 105 + 1 ---------------GGUUUUGUAUUUUGCAAGGUCAUUAUUUUAGGAAAUGGGUAUGUUGUGAGGCUACGAACUUGAGGAAACCCAUUUCGUACAACGACUUUACGAAGCACAAAAAAU ---------------..((((((.(((((.((((((....((.((.(((((((((...((.(.(((.......))).).)).))))))))).)).)).)))))).))))).))))))... ( -27.80) >DroSim_CAF1 14370 105 + 1 ---------------GGGUUUGGAUUUCGCAAGGUCAUUAUUUUAGGAAAUGGGUAUGUUGUGAGGAUACGAACUUGAGGGAACCCAUUUCGCACACCGACUUUGCGAAGCACAAAAAAU ---------------...((((..((((((((((((..........(((((((((.(.(..((((........))))..).))))))))))(.....)))))))))))))..)))).... ( -33.80) >DroEre_CAF1 18441 91 + 1 UUCAGGAAACUGGCCAUAAUAGGAUUCUGUAAGGUCACUAUUUUAGGAAAUGGAUAUGUUGUGAGGAUAC----------------------------GACUUUACGAAGCACGAAAAA- .((((....))))((......)).(((.((((((((.((((((....)))))).......(((....)))----------------------------)))))))))))..........- ( -19.60) >consensus _______________GGUAUAGGAUUUUGCAAGGUCAUUAUUUUAGGAAAUGGGUAUGUUGUGAGGAUACGAACUUGAGGAAACCCAUUUCGUACAACGACUUUACGAAGCACAAAAAAU .....................(..((((((((((((.(((...)))(((((((((......((((........)))).....))))))))).......))))))))))))..)....... (-13.56 = -16.88 + 3.31)
Location | 1,630,097 – 1,630,217 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 67.52 |
Mean single sequence MFE | -19.13 |
Consensus MFE | -11.51 |
Energy contribution | -14.50 |
Covariance contribution | 3.00 |
Combinations/Pair | 1.19 |
Mean z-score | -1.20 |
Structure conservation index | 0.60 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.544352 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1630097 120 - 20766785 AUUAUUUGUGCUUCGCAAAGUCGUUGUACGAAAUGGGUUUCCUUAAGCUCGUAUCCUCACCAUAUACCUAUUUCUUAAAAUAAUGACCUUGUAAAAUUCUAUAUCGCUCAGUUUCUUGAA .....(((.((((..(((.((((((((..(((((((((...........................))))))))).....)))))))).)))..))..........)).)))......... ( -19.03) >DroSec_CAF1 15933 105 - 1 AUUUUUUGUGCUUCGUAAAGUCGUUGUACGAAAUGGGUUUCCUCAAGUUCGUAGCCUCACAACAUACCCAUUUCCUAAAAUAAUGACCUUGCAAAAUACAAAACC--------------- ...(((((((.((.((((.((((((((..(((((((((........((.....))..........))))))))).....)))))))).)))).)).)))))))..--------------- ( -25.47) >DroSim_CAF1 14370 105 - 1 AUUUUUUGUGCUUCGCAAAGUCGGUGUGCGAAAUGGGUUCCCUCAAGUUCGUAUCCUCACAACAUACCCAUUUCCUAAAAUAAUGACCUUGCGAAAUCCAAACCC--------------- ....((((...(((((((.((((.(((..(((((((((.......((........))........))))))))).....))).)))).)))))))...))))...--------------- ( -25.36) >DroEre_CAF1 18441 91 - 1 -UUUUUCGUGCUUCGUAAAGUC----------------------------GUAUCCUCACAACAUAUCCAUUUCCUAAAAUAGUGACCUUACAGAAUCCUAUUAUGGCCAGUUUCCUGAA -........(((..(((...((----------------------------(((...((((......................))))...))).))....)))...)))(((....))).. ( -6.65) >consensus AUUUUUUGUGCUUCGCAAAGUCGUUGUACGAAAUGGGUUUCCUCAAGUUCGUAUCCUCACAACAUACCCAUUUCCUAAAAUAAUGACCUUGCAAAAUCCAAAACC_______________ ..............((((.((((((((..(((((((((...........................))))))))).....)))))))).))))............................ (-11.51 = -14.50 + 3.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:23 2006