Locus 2449

Sequence ID 2R_DroMel_CAF1
Location 8,813,378 – 8,813,472
Length 94
Max. P 0.763960
window4048

overview

Window 8

Location 8,813,378 – 8,813,472
Length 94
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 83.13
Mean single sequence MFE -28.55
Consensus MFE -21.75
Energy contribution -22.08
Covariance contribution 0.34
Combinations/Pair 1.18
Mean z-score -2.07
Structure conservation index 0.76
SVM decision value 0.51
SVM RNA-class probability 0.763960
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8813378 94 - 20766785
ACGCCACCUACUUCUGUGGCUCCAUUAAGAAGGAUGUGGUCAUAUCGAGUAAGUAUCAUAGAGCUUUUUAUGGGACAAAAGCUC--AGGUUACACU
..(((((.(((((.((((((..((((......))))..))))))..))))).))......((((((((........))))))))--.)))...... ( -27.00)
>DroSec_CAF1 58053 94 - 1
ACGCCACCUACUUCUGUGGCUCCAUCCAGAAGGAUGUGGUCAUAUCGAGUAAGUAUCAUAGAGCUUUUUAUGGGGCAAAAGCUC--AGGUUACACU
..(((((.(((((.((((((..(((((....)))))..))))))..))))).))......((((((((........))))))))--.)))...... ( -32.10)
>DroSim_CAF1 59440 94 - 1
ACGCCACCUACUUCUGUGGCUCCAUCCAGAAGGAUGUCUUUAUAAAGAGUAAGUAUCAUAGAGCUUUUUAUGGGACAAAAUUAU--AGGGUCCACC
..(((((........)))))(((((((....))))(((((.(((((((((............))))))))))))))........--.)))...... ( -23.80)
>DroEre_CAF1 60730 93 - 1
ACGCCACCUACUUCUGUGGCUCCAUCAAGAAGGAUGUGGUCAUAUCGAGUAAGUUGCAUAGAGCUUUUCAGCG-CGGAAAGCUC--AGGUAACACU
........(((((.((((((..((((......))))..))))))..))))).(((((...(((((((((....-.)))))))))--..)))))... ( -33.40)
>DroYak_CAF1 61051 93 - 1
ACGCCACCUACUUCUGUGGCUCCAUCAACAAGGAUGUGGUCAUAUCGAGUAAGUUUUUGAGAGCUUUUUGGGU-GCGAAAGCUC--AGGUAACACU
..(((((.(((((.((((((..((((......))))..))))))..))))).))......((((((((.....-..))))))))--.)))...... ( -29.00)
>DroAna_CAF1 57857 93 - 1
ACGCCACCUACUUCUGUGGCUCCAUCAAGAAGGACGUGGUGAUAUCGAGUAAGUAGCGGCGAGCUUUUUGGG---GAAAAGCUUUGUGGGAAGACU
.((((((...((((((((....)))..)))))...))))))...............(.(((((((((((...---))))))).)))).)....... ( -26.00)
>consensus
ACGCCACCUACUUCUGUGGCUCCAUCAAGAAGGAUGUGGUCAUAUCGAGUAAGUAUCAUAGAGCUUUUUAGGG_ACAAAAGCUC__AGGUAACACU
..(((((.(((((.((((((..((((......))))..))))))..))))).))......((((((((........))))))))...)))...... (-21.75 = -22.08 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:21 2006