Locus 2448

Sequence ID 2R_DroMel_CAF1
Location 8,811,217 – 8,811,310
Length 93
Max. P 0.830839
window4047

overview

Window 7

Location 8,811,217 – 8,811,310
Length 93
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 79.32
Mean single sequence MFE -33.20
Consensus MFE -22.15
Energy contribution -21.90
Covariance contribution -0.25
Combinations/Pair 1.22
Mean z-score -1.74
Structure conservation index 0.67
SVM decision value 0.71
SVM RNA-class probability 0.830839
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8811217 93 + 20766785
CAGCCUGUCGCAUAUCCUGCGGCGAUGCAGUGACUUU--------UCCUGACU----UCC----UUCUGGCCUGCCUCGUGGCAAAGGACCUGUUCCCAAGCUGCAACC
.....(((((((.....))))))).(((((((((...--------((((....----.((----....))..((((....)))).))))...))).....))))))... ( -27.20)
>DroSec_CAF1 55744 93 + 1
CAGCCUGCCGCAUAUCCUGCGGCGAUGCAGUGACUCU--------UCCUGACU----UCC----UUCUGGCCUGCCUCGUGGCAAAGGACCUGUUCCCAAGCUGCAACC
.....(((((((.....))))))).(((((((((...--------((((....----.((----....))..((((....)))).))))...))).....))))))... ( -29.90)
>DroSim_CAF1 56860 93 + 1
CAGCCUGCCGCAUAUCCUGCGGCGAUGCAGUGACUCU--------UCCUGACU----UCC----UUCUGGCCUGCCUCGUGGCAAAGGACCUGUUCCCAAGCUGCAACC
.....(((((((.....))))))).(((((((((...--------((((....----.((----....))..((((....)))).))))...))).....))))))... ( -29.90)
>DroEre_CAF1 58541 91 + 1
CAGCCCGCCGCAUAUCCUGCGGCGAUGCAGUGAGU----------UCCCCGCU----UCC----UUCUGGCCUGCCUCCUGCCAAAGGAUCUGGUCCCAAGCUGCAGCC
..((.(((((((.....))))))).((((((....----------...(((..----(((----((.((((.........)))))))))..)))......)))))))). ( -36.12)
>DroYak_CAF1 58780 93 + 1
CAACCCGCCGCAUAUCCUGCGGCGAUGCAGUGACUUU--------UCCUCGCC----CCC----UUCUGGCCCGCCUCCUGGCAAAGGAUCUGGUCCCAAGCUGCAGCC
.....(((((((.....))))))).((((((((((..--------((((.(((----...----....)))..(((....)))..))))...))))....))))))... ( -37.10)
>DroPer_CAF1 64396 108 + 1
CAACUUGCCGCAUAUCCUGAGGCGAUGCAGUGGCUCGGGUGCCGGUCCUGGUGCUGCUCCUAGGUCUUGGUCCUUUUCCCGGCACUAGUCCUUGUCCUGA-CUGCAGCC
....(((((.((.....)).)))))(((((....(((((.((.((..(((((((((.....(((.......))).....)))))))))..)).)))))))-)))))... ( -39.00)
>consensus
CAGCCUGCCGCAUAUCCUGCGGCGAUGCAGUGACUCU________UCCUGACU____UCC____UUCUGGCCUGCCUCCUGGCAAAGGACCUGGUCCCAAGCUGCAACC
.....(((((((.....))))))).((((((......................................(((........)))...((........))..))))))... (-22.15 = -21.90 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:20 2006