| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,808,758 – 8,808,858 |
| Length | 100 |
| Max. P | 0.660069 |
| Location | 8,808,758 – 8,808,858 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 79.65 |
| Mean single sequence MFE | -27.27 |
| Consensus MFE | -12.06 |
| Energy contribution | -12.20 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.660069 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8808758 100 + 20766785 UCGUUUGAUCAUCGUGCCCACUUCGAAACUCGACGCACACGGGGCAAUGAAAAUUAAUUG-AAAAAUUGAUUGAAAUUGUGCACUGAGCGGUUCAAUCAGC (((.(((((..((((((((...(((.....)))((....)))))).))))..))))).))-)....(((((((((....(((.....))).))))))))). ( -26.10) >DroPse_CAF1 60591 87 + 1 UCAUCCGAUCAUCGUGGCCACAUCA------------CG-AGCAUAAUGAAAAUUAAUUG-GAAAACUGAUUGAAAUUGUGCACUGAGCAGUUCAAUCAGC ...((((((..((((((.....)))------------))-)...((((....))))))))-))...(((((((((....(((.....))).))))))))). ( -25.00) >DroEre_CAF1 56135 101 + 1 UCGUUUGAUCAGCGUGCCCACUUCCAAACUGGACGCACGCGGGGCAAUGAAAAUUAAUUGCAAAAAUUGAUUGAAAUUGUGCACUGAGCGGUUCAAUCAGC ((((((.....((((((.....(((.....))).)))))).(.(((((...((((((((.....))))))))...))))).)...)))))).......... ( -27.90) >DroYak_CAF1 56120 100 + 1 UCGUUUGAUCAUCGUGCCCACUUCCAAACUGGACGCACGCGGGGCAAUGAAAAUUAAUUG-AAAAAUUGAUUGAAAUUGUGCACUGAGCGGUUCAAUCAGC (((.(((((..((((((((...(((.....)))((....)))))).))))..))))).))-)....(((((((((....(((.....))).))))))))). ( -28.00) >DroAna_CAF1 54111 95 + 1 -UGCUUGGCCAACUUGGCCAACUGCA---UGGCUGCUUG-GAGGUAAUGAAAAUUAAUUG-AAAAAUUGAUUGAAAUUGUGCACUGAGCAGUUCAAUCAGC -(((((((((.....))))))..)))---((((((((..-(..(((.....((((((((.-...)))))))).......))).)..))))).)))...... ( -31.60) >DroPer_CAF1 62113 87 + 1 UCAUCCGAUCAUCGUGGCCACAUCA------------CG-AGCAUAAUGAAAAUUAAUUG-GAAAACUGAUUGAAAUUGUGCACUGAGCAGUUCAAUCAGC ...((((((..((((((.....)))------------))-)...((((....))))))))-))...(((((((((....(((.....))).))))))))). ( -25.00) >consensus UCGUUUGAUCAUCGUGCCCACUUCCA___UGGACGCACG_GGGGCAAUGAAAAUUAAUUG_AAAAAUUGAUUGAAAUUGUGCACUGAGCAGUUCAAUCAGC ........((((.((.(((.....................))))).))))................(((((((((....(((.....))).))))))))). (-12.06 = -12.20 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:18 2006