Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,800,205 – 8,800,295 |
Length | 90 |
Max. P | 0.938578 |
Location | 8,800,205 – 8,800,295 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 69.32 |
Mean single sequence MFE | -18.67 |
Consensus MFE | -10.71 |
Energy contribution | -11.27 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.07 |
Mean z-score | -1.72 |
Structure conservation index | 0.57 |
SVM decision value | 1.27 |
SVM RNA-class probability | 0.938578 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8800205 90 + 20766785 UUUGUGGCCGGCCCUAAUUUUCGGCAUUUUCCUUCAGC-CAGGAUCUCAGCUUCAUCCUGUGCCCUGCCAUCCUGCCAUCCAAUCACUUGC ...((((((((.........)))))...........(.-((((((..(((...(((...)))..)))..)))))).).......))).... ( -18.20) >DroSim_CAF1 45863 75 + 1 UUUGUGGCUGGCCCUUAUUU-CGG----------CAGC-CAGGACCUCAUCUUCUUGCUGUUCCCUGCCACC----CACCCAAUCACUUGC ...((((.((((........-.((----------((((-.((((.......)))).))))))....)))).)----)))............ ( -18.82) >DroEre_CAF1 47867 80 + 1 UUUGUGGCCGGCCCAAAUGCUCGGC----UCCUUCAGCCCAGGACCUCAUCUUCAUCCUGGCCCCUGCCAAU-------UUUUGCUUUUGC ....((((.((((.........(((----(.....)))).((((...........))))))))...))))..-------............ ( -19.00) >consensus UUUGUGGCCGGCCCUAAUUUUCGGC____UCCUUCAGC_CAGGACCUCAUCUUCAUCCUGUCCCCUGCCAAC____CA_CCAAUCACUUGC ...(((((.((.((........))...............(((((...........)))))...)).))))).................... (-10.71 = -11.27 + 0.56)
Location | 8,800,205 – 8,800,295 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 69.32 |
Mean single sequence MFE | -24.47 |
Consensus MFE | -12.64 |
Energy contribution | -13.20 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.07 |
Mean z-score | -1.98 |
Structure conservation index | 0.52 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.903260 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8800205 90 - 20766785 GCAAGUGAUUGGAUGGCAGGAUGGCAGGGCACAGGAUGAAGCUGAGAUCCUG-GCUGAAGGAAAAUGCCGAAAAUUAGGGCCGGCCACAAA .(((....)))..((((....((((..(((.((((((.........))))))-)))...........((........)))))))))).... ( -24.00) >DroSim_CAF1 45863 75 - 1 GCAAGUGAUUGGGUG----GGUGGCAGGGAACAGCAAGAAGAUGAGGUCCUG-GCUG----------CCG-AAAUAAGGGCCAGCCACAAA .(((....))).(((----(.((((......((((....((........)).-))))----------((.-......)))))).))))... ( -23.50) >DroEre_CAF1 47867 80 - 1 GCAAAAGCAAAA-------AUUGGCAGGGGCCAGGAUGAAGAUGAGGUCCUGGGCUGAAGGA----GCCGAGCAUUUGGGCCGGCCACAAA ((....))....-------..((((...((((..((((..(((...)))((.((((.....)----))).))))))..)))).)))).... ( -25.90) >consensus GCAAGUGAUUGG_UG____GAUGGCAGGGAACAGGAUGAAGAUGAGGUCCUG_GCUGAAGGA____GCCGAAAAUUAGGGCCGGCCACAAA .....................((((.((...((((((.........))))))...............((........)).)).)))).... (-12.64 = -13.20 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:14 2006