Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,796,891 – 8,796,997 |
Length | 106 |
Max. P | 0.720412 |
Location | 8,796,891 – 8,796,997 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 79.70 |
Mean single sequence MFE | -31.35 |
Consensus MFE | -20.05 |
Energy contribution | -21.55 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.07 |
Mean z-score | -1.84 |
Structure conservation index | 0.64 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.720412 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8796891 106 - 20766785 GGGGAUGGUUGGGUGGCCAUCGGUUGUUUUUUUUUUUUUUGGAUUGGCUUCCAAUCCACUGAGUCCGAAUCCAAAGGCUCGAUUCACAACUGACAGCCAACGAAUU ...(((((((....)))))))(((((((...........((((((((...)))))))).((((((.((..(....)..)))))))).....)))))))........ ( -33.80) >DroSec_CAF1 41283 96 - 1 UGGGAUGGUUAUGUUGGCUUCGCUUGGU----------CUGGGUUGGCUUCCAAUCCACUGAGUCCGAAACGAAAGGCUCGAUUCACAACUGACAGCCAACGAAUU ...........(((((((((((.(((..----------.((((((((...)))))))).((((((.((..(....)..))))))))))).))).)))))))).... ( -34.00) >DroSim_CAF1 42508 96 - 1 UGGGACGGUUAUGUUGGCUUCGCUUGGU----------CUGGGUUGGCUUCCAAUCCACUGAGUCCGAAACGAAAGGCUCGAUUCACAACUGACAGCCAACGAAUU ...........(((((((((((.(((..----------.((((((((...)))))))).((((((.((..(....)..))))))))))).))).)))))))).... ( -34.00) >DroYak_CAF1 44280 82 - 1 CGGGAUAGUU--------------UGGG----------UUGGUUUGGGUUCCAAUCCACUGAGUCCGAGACCAAAGGCUCGAUUCACAACUGACAGCCAACGAAUU ..((.(((((--------------((((----------((((........)))))))).((((((.(((.((...))))))))))).)))))....))........ ( -23.60) >consensus UGGGAUGGUUAUGUUGGCUUCGCUUGGU__________CUGGGUUGGCUUCCAAUCCACUGAGUCCGAAACCAAAGGCUCGAUUCACAACUGACAGCCAACGAAUU ..((...((((.((((.......................((((((((...)))))))).((((((.((..(....)..))))))))))))))))..))........ (-20.05 = -21.55 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:12 2006