Locus 2440

Sequence ID 2R_DroMel_CAF1
Location 8,782,424 – 8,782,514
Length 90
Max. P 0.883420
window4035

overview

Window 5

Location 8,782,424 – 8,782,514
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 97.33
Mean single sequence MFE -30.99
Consensus MFE -26.81
Energy contribution -26.97
Covariance contribution 0.16
Combinations/Pair 1.04
Mean z-score -1.70
Structure conservation index 0.87
SVM decision value 0.93
SVM RNA-class probability 0.883420
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8782424 90 + 20766785
UCGGGAAUUAAACAGCUCAUUUGCCUGCUAGCCUGAUGAGAAAAGUUUACUCCGGCGGGCGUACGAGGCGUAUGAGCGAUAUCAACCUGG
.((((.........((((((.(((((....(((((..(((.........)))...))))).....))))).))))))........)))). ( -31.03)
>DroSec_CAF1 26791 90 + 1
UCGGGAAUUAAACAGCUCAUUUGCCUGCUAGCCUGAUGGGAAAAGUUUACUCCGGCGGGCGUACGCGGCGUAUGAGCGAUAUCAACCUGG
.((((.........((((((.((((.((..(((((.(.(((.........))).))))))....)))))).))))))........)))). ( -33.03)
>DroSim_CAF1 27940 90 + 1
UCGGGAAUUAAACAGCUCAUUUGCCUGCUAGCCUGAUGAGAAAAGUUUACUCCGGCGGGCGUACGCGGCGUAUGAGCGAUAUCAACCUGG
.((((.........((((((.((((.((..(((((..(((.........)))...)))))....)))))).))))))........)))). ( -31.53)
>DroEre_CAF1 28452 89 + 1
UCGGGAAUUAAACAGCUCAUUUGCCUGCCAG-CUGAUGGGAAAAGUUUACUCCGGCGGGCGUACGCGGCGUAUGAGCGAUAUCAACCUGG
.((((.........((((((.((((.(((.(-(((..(((.........))))))).)))(....))))).))))))........)))). ( -29.13)
>DroYak_CAF1 29691 89 + 1
UCGGGAAUUAAACAGCUCAUUUGCCUGCUGG-CUGAUGAGAAAAGUUUACUCCGGCGGGCGUACGCGGCGUAUGAGCGAUAUCAACCUGG
.((((.........((((((.((((.(((.(-(((..(((.........))))))).)))(....))))).))))))........)))). ( -30.23)
>consensus
UCGGGAAUUAAACAGCUCAUUUGCCUGCUAGCCUGAUGAGAAAAGUUUACUCCGGCGGGCGUACGCGGCGUAUGAGCGAUAUCAACCUGG
.((((.........((((((.((((((...(((((..(((.........)))...)))))...)).)))).))))))........)))). (-26.81 = -26.97 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:09 2006