Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,629,633 – 1,629,727 |
Length | 94 |
Max. P | 0.835967 |
Location | 1,629,633 – 1,629,727 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.84 |
Mean single sequence MFE | -37.42 |
Consensus MFE | -20.48 |
Energy contribution | -20.65 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.15 |
Mean z-score | -1.75 |
Structure conservation index | 0.55 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.835967 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1629633 94 + 20766785 ----CACGCUGCGGGGAGGCCCUAAAUAUAGAACGACUUGAGGUAGGUUCGAACUCA-GCAAC---------------------GAGCGUUGCAUCAGCAGCAGCGGCUUCGGAAGGGCA ----..(((((((((..(..((((.....((.....)).....))))..)...))).-(((((---------------------....))))).......))))))(((.(....)))). ( -33.10) >DroPse_CAF1 40616 116 + 1 CUCGUUCGCUGCGGGGAGGCCCUAAAUAUAGAACAACUUGAGGUAGGUUCGAAAUCGAGCCGCGCUGCAGUCCCGCUUCAGCUCCCGGGCUGCAGCAACAGCAGCAGCAA----CAGCCA ...(((.((((((((....)))................((..((.((((((....))))))..((((((((((.((....))....)))))))))).))..)))))))))----)..... ( -47.30) >DroSec_CAF1 15528 94 + 1 ----CACGCUGCGGGGAGGCCCUAAAUAUAGAACGACUUGAGGUAGGUUCGAGCUCA-GCAAC---------------------GAGCGUUGCAUCAGCAGCAGCAGCCUCGGAAGGGCA ----...((((((((....)))........((((.((.....))..))))..(((..-(((((---------------------....)))))...))).))))).(((.(....)))). ( -35.10) >DroSim_CAF1 13965 94 + 1 ----CACGCUGCGGGGAGGCCCUAAAUAUAGAACGACUUGAGGUAGGUUCGAGCUCA-GCAAC---------------------GAGCGUUGCAUCAGCAGCAGCAGCCUCGGAAGGGCA ----...((((((((....)))........((((.((.....))..))))..(((..-(((((---------------------....)))))...))).))))).(((.(....)))). ( -35.10) >DroEre_CAF1 18009 91 + 1 ----CUCGCUGCAGGGAGGCCCUAAAUAUAGAACGACUUGAGGUAGGUUCGAGCUCA-ACAAC---------------------GAGCGUUGCAUCAGCAGC---AGCCUCGGAAAGGCA ----...(((.....(((((..........((((.((.....))..))))..((((.-.....---------------------))))(((((....)))))---.))))).....))). ( -29.20) >DroPer_CAF1 35154 116 + 1 CUCGUUCGCUGCGGGGAGGCCCUAAAUAUAGAACAACUUGAGGUAGGUUCGAAAUCGAGCUGCGCUGCAGUCCCGCUUCAGCUCCCGGGCUGCAGCAACAGCAGCAGCAA----CAGCCA ...(((.((((((((....)))................((..((.((((((....))))))..((((((((((.((....))....)))))))))).))..)))))))))----)..... ( -44.70) >consensus ____CACGCUGCGGGGAGGCCCUAAAUAUAGAACGACUUGAGGUAGGUUCGAACUCA_GCAAC_____________________GAGCGUUGCAUCAGCAGCAGCAGCCUCGGAAAGGCA .......(((((((((...)))).......((((.((.....))..))))......................................(((((....))))).)))))............ (-20.48 = -20.65 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:21 2006