Locus 2439

Sequence ID 2R_DroMel_CAF1
Location 8,777,848 – 8,777,949
Length 101
Max. P 0.994795
window4034

overview

Window 4

Location 8,777,848 – 8,777,949
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 92.77
Mean single sequence MFE -21.84
Consensus MFE -19.84
Energy contribution -19.60
Covariance contribution -0.24
Combinations/Pair 1.15
Mean z-score -1.88
Structure conservation index 0.91
SVM decision value 2.51
SVM RNA-class probability 0.994795
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8777848 101 + 20766785
CUUAUAAAAAUGUUACGCACUGUACCGUAUAUCUAUGCAAAAUGAUUUCCCAUAAGGCAAAACUAUUAGUAUUGCUUUUGGCUUUUGUGCAACAUUUUACU
......((((((((..((((......((((....))))...........(((.(((((((.((.....)).)))))))))).....))))))))))))... ( -21.80)
>DroSec_CAF1 22338 101 + 1
CAUAUAAAAAUGUUACGCACUGUACCGUAUAUGUAUGCAAAAUGAUUUCCCAUAAGGCAAAACUAUUAGUAUUGCUUUUGGCUUUUGUGCAACAUUUUACU
......((((((((..((((......((((....))))...........(((.(((((((.((.....)).)))))))))).....))))))))))))... ( -21.80)
>DroSim_CAF1 23444 101 + 1
CUUAUAGAAAUGUUACGCACUGUACCGUAUAUGUAUGCCAAAUGAUUUCCCUUAAGGCAAAACUAUUAGUAUUGCUUUUGGCUUUUGUGCAACAUUUUACU
......((((((((..((((.((((.......))))((((((.............(((((.((.....)).)))))))))))....))))))))))))... ( -21.81)
>DroEre_CAF1 23973 101 + 1
CUUAUAAGAAUGUGACGCACUGUACCGUAUAUGUAUGCAAAACGAUUUCCCAUAAGGCAAAACUAUUAGUAUUGCUUUUGGCUUUUGUGCAACAUUUUCCG
......(((((((...((((......((((....))))...........(((.(((((((.((.....)).)))))))))).....)))).)))))))... ( -21.40)
>DroYak_CAF1 25049 101 + 1
CCUACAAAAAUGUGACGCACUGUAUCUCAUAUGUAUGCAAACUGAUUUCCCAUAAGGCGAAACUAUUAGUAUUGCUUUUGGCGUUUGUGCAACAUUUUACU
......(((((((...((((((((((......).)))))..........(((.(((((((.((.....)).)))))))))).....)))).)))))))... ( -22.40)
>consensus
CUUAUAAAAAUGUUACGCACUGUACCGUAUAUGUAUGCAAAAUGAUUUCCCAUAAGGCAAAACUAUUAGUAUUGCUUUUGGCUUUUGUGCAACAUUUUACU
......(((((((...((((......((((....))))...........(((.(((((((.((.....)).)))))))))).....)))).)))))))... (-19.84 = -19.60 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:08 2006