Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,763,314 – 8,763,420 |
Length | 106 |
Max. P | 0.685487 |
Location | 8,763,314 – 8,763,420 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 84.29 |
Mean single sequence MFE | -42.34 |
Consensus MFE | -34.50 |
Energy contribution | -34.53 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.18 |
Mean z-score | -1.79 |
Structure conservation index | 0.81 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.685487 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8763314 106 + 20766785 CUGGCCAGACCAUUGUGGGUCUGCAGGCCGGUUCCAACAAGGGAGCCACCCAGGCUGGCCAGAACCUCGGCGCUGGCCGCAAGAUCCUGCUCGGCAAGUAAGCG--CC ((((((((.((......((((....))))((((((......)))))).....))))))))))......((((((.((((((......)))..))).....))))--)) ( -51.80) >DroVir_CAF1 9781 106 + 1 CUGGCCAAACCAUUGUCGGUCUCCAGGCUGGCUCCAACAAGGGCGCCACCCAGGCUGGCCAGAAUAUUGGCGCCGGUCGCAAAAUCUUGCUCGGCAAGUAAAUG--CU (((((((..((...(((((((....)))))))........(((.....))).)).))))))).........(((((..((((....))))))))).........--.. ( -38.30) >DroGri_CAF1 10953 104 + 1 CUGGCCAGACCAUCGUCGGCCUGCAGGCCGGUUCCAACAAGGGUGCCACCCAGGCUGGCCAGAAUAUUGGCGCUGGCCGCAAGAUCUUGCUUGGCAAGUAAAUU---- ((((((((.((....((((((....)))))).........(((.....))).)))))))))).........(((.(((((((....))))..))).))).....---- ( -44.70) >DroSec_CAF1 7953 106 + 1 CUGGCCAGACCAUCGUGGGUCUGCAGGCCGGUUCCAACAAUGUAGCCCCACUGGCCGGUCAGAACCUCGGCGCUGUCCGCAAGAUCCUGCUCCGCAAGUACCUU--CC (((((((((((......)))))...(((((((.................))))))))))))).....(((.((.(..(....)..)..)).)))..........--.. ( -34.83) >DroWil_CAF1 12535 108 + 1 CUGGCCAGACCAUUGUUGGUCUUCAGGCCGGUUCCAACAAGGGUGCCACCCAGGCUGGUCAGAACUUGGGCGCUGGCCGCAAAAUCUUGCUGGGCAAGUAAAUUUGCU ((((((((((((....))))))...))))))..(((.(((((.(((...(((((((.(........).))).))))..)))...))))).)))(((((....))))). ( -42.90) >DroMoj_CAF1 11454 104 + 1 CUGGCCAGACCAUCGUUGGCCUCCAGGCCGGCUCCAACAAGGGCGCCACCCAGGCUGGUCAGAAUAUCGGCGCUGGCCGCAAGAUUCUGCUCGGCAAGUAAAUC---- ((((((((.((...(((((((....)))))))........(((.....))).)))))))))).........(((.((((((......)))..))).))).....---- ( -41.50) >consensus CUGGCCAGACCAUCGUCGGUCUGCAGGCCGGUUCCAACAAGGGAGCCACCCAGGCUGGCCAGAACAUCGGCGCUGGCCGCAAGAUCCUGCUCGGCAAGUAAAUU__C_ ((((((((.((......((((....))))(((.((......)).))).....)))))))))).........(((.((((((......)))..))).)))......... (-34.50 = -34.53 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:06 2006