Locus 2436

Sequence ID 2R_DroMel_CAF1
Location 8,755,255 – 8,755,365
Length 110
Max. P 0.793444
window4031

overview

Window 1

Location 8,755,255 – 8,755,365
Length 110
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 92.17
Mean single sequence MFE -24.75
Consensus MFE -18.23
Energy contribution -18.83
Covariance contribution 0.60
Combinations/Pair 1.06
Mean z-score -2.29
Structure conservation index 0.74
SVM decision value 0.59
SVM RNA-class probability 0.793444
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8755255 110 - 20766785
CUCAGCUGAUCGGCCACACUUUCUGGACAAGAAGAAGCACCUGCAUUUUUCCCCACUUA-AACCAGAAAAACAUUUAAUUUUCUUGGUUUUAUUACUGAAAAUCAAGUUGA
.((((((((((((..........(((....((((((((....)).)))))).)))...(-((((((((((........))))).)))))).....))))...)).)))))) ( -21.50)
>DroSec_CAF1 2038 109 - 1
CUCAGCUGAUCGGCCACACUUUCUGGGCAAGAAGAAGCACCUGCAUUUUUC-ACACUUA-AACAAGAAAAACAUUUAAUUUUCUUGGUUUUAUUACUGAAAAUCAGGUUGA
....(((..((.(((.((.....)))))..))...)))(((((...(((((-(....((-(.((((((((........))))))))...)))....)))))).)))))... ( -24.30)
>DroSim_CAF1 2036 109 - 1
CUCAGCUGAUCGGCCACACUUUCUGGGCAAGAAGAAGCACCUGCAUUUUUC-CCACUUA-AACCAGAAAAACAUUUAAUUUUCUUGGUUUUAUUACUGAAAAUCAGGUUGA
....(((..((.(((.((.....)))))..))...)))(((((.((((((.-......(-((((((((((........))))).)))))).......)))))))))))... ( -25.64)
>DroEre_CAF1 2035 110 - 1
CUCAGCUGAUCAGCCAAACUUUUUGGGCAAGAAGAAGCACCUGCAUUUUCC-CCACCUAAAACCAGAAAAACAUUUAAUUUUCUUGGUUUUAUUACUGAAAAUCAGGUUAA
....(((..((.(((..........)))..))...)))(((((.((((((.-.....(((((((((((((........))))).)))))))).....)))))))))))... ( -26.70)
>DroYak_CAF1 2039 109 - 1
UACAGCUGAUCAGCCACACUUUCUGGGCAAGAAGAAGCACCUGCAUUGUCC-CGAAUUA-AACCAGAAAAACAUUUAAUUUUCUUGGUUUCAUUACUGAAAGUCAGGUUAC
...........((((..((((((.((((((..((......))...))))))-..(((.(-((((((((((........))))).)))))).)))...))))))..)))).. ( -25.60)
>consensus
CUCAGCUGAUCGGCCACACUUUCUGGGCAAGAAGAAGCACCUGCAUUUUUC_CCACUUA_AACCAGAAAAACAUUUAAUUUUCUUGGUUUUAUUACUGAAAAUCAGGUUGA
....(((..((.(((.((.....)))))..))...)))(((((.((((((..........((((((((((........))))).)))))........)))))))))))... (-18.23 = -18.83 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:05 2006