Locus 2435

Sequence ID 2R_DroMel_CAF1
Location 8,750,263 – 8,750,382
Length 119
Max. P 0.623200
window4030

overview

Window 0

Location 8,750,263 – 8,750,382
Length 119
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 81.46
Mean single sequence MFE -37.74
Consensus MFE -22.74
Energy contribution -23.02
Covariance contribution 0.28
Combinations/Pair 1.26
Mean z-score -1.94
Structure conservation index 0.60
SVM decision value 0.18
SVM RNA-class probability 0.623200
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8750263 119 - 20766785
UCAGCAUUACGGGCAGAGCCUGCAUACGCAGGAUAAAAACGAAAUCCGCGAAAUACUAGCGGGUAUGGUGGCCGCAGAGAACCUGACCAGCAGCCACAACAAUUCCUACUGGCCAAACU
..........((.(((..(((((....)))))........(((((((((.........))))))...(((((.((..............)).))))).....)))...))).))..... ( -35.74)
>DroPse_CAF1 3575 119 - 1
CAAGAACUACGGACAGGAUCUCAAGUCGCAGGAUCCAGCCGAGAUUCGUGGCUUGUUGGCGAGCAUACUGGUCGCCGAUAAUCUAACAAGCAGCAACAACAACACCUACUGGCCAAAUU
...(((((.(((...((((((.........))))))..))))).))).((((((((((((((.(.....).)))))))))).........(((...............))))))).... ( -34.56)
>DroSec_CAF1 3619 119 - 1
UCAGCAUUACGGGCAGAGUCUGCAUACGCAGGAUAUAAACGAAAUCCGCGAGAUGCUCGCGGGUAUGGUGGCCGCAGAGAACCUGACCAGCAGCCACAACAAUUCCUACUGGCCAAACU
..........((.((((((((((....)))))........((((((((((((...)))))))))...(((((.((..............)).))))).....))))).))).))..... ( -38.54)
>DroSim_CAF1 3397 119 - 1
UCAGCAUUACGGGCAGAGUCUGCAUACGCAGGAUAUAAACGAGAUCCGCGAGAUACUCGCGGGUAUGGUGGCCGCAGAGAACCUGACCAGCAGCCACAACAAUUCCUACUGGCCAAACU
..........((.((((((((((....)))))........((((((((((((...)))))))))...(((((.((..............)).))))).....))))).))).))..... ( -38.34)
>DroYak_CAF1 3392 119 - 1
UCAGCACUACGGCCAGAGUCUGCAAACGCAGGAUAUAAACGAGAUCCGCGAAAUACUGGCGGGUAUGGUGGCCGCUGAGAACCUGACCAGCAGCCACAACAACUCCUACUGGCCAAACU
..........(((((((((((((....)))))........(((((((((.(.....).))))))...(((((.((((..........)))).))))).....))))).))))))..... ( -44.70)
>DroPer_CAF1 3589 119 - 1
CAAGAACUACGGACAGGAUCUCAAGUCGCAGGAUCCAGCCGAGAUUCGUGGCUUGUUGGCGAGCAUACUGGUCGCCGAUAAUCUAACAAGCAGCAACAACAACACCUACUGGCCAAAUU
...(((((.(((...((((((.........))))))..))))).))).((((((((((((((.(.....).)))))))))).........(((...............))))))).... ( -34.56)
>consensus
UCAGCACUACGGGCAGAGUCUGCAUACGCAGGAUAUAAACGAGAUCCGCGAAAUACUGGCGGGUAUGGUGGCCGCAGAGAACCUGACCAGCAGCCACAACAACUCCUACUGGCCAAACU
..........((.(((..(((((....)))))........(((((((((.(.....).))))))...(((((.((..............)).))))).....)))...))).))..... (-22.74 = -23.02 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:04 2006