| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,741,122 – 8,741,214 |
| Length | 92 |
| Max. P | 0.588244 |
| Location | 8,741,122 – 8,741,214 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 79.31 |
| Mean single sequence MFE | -26.88 |
| Consensus MFE | -17.76 |
| Energy contribution | -18.73 |
| Covariance contribution | 0.97 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.588244 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8741122 92 - 20766785 CUAUCAACGAUGCGUU-UUUUCGCCGUAUAUACGGUGAAUUCAUCGCAGCGAAGUGAAGAGAAUGGAAUGGAGCGAGUUAAGCGCA----------CUGGAGU .......((.((((((-(.((((((((....))))))))(((.((((......)))).)))..................)))))))----------.)).... ( -23.80) >DroSec_CAF1 4002 87 - 1 CUAUCAACGAUGCGUU-UUUUCGCCGUAUAUACGGUGAAUUCAUCGCAGCGAAGUGAAGAGAA-----UGGAGCGAGUUAAGCGCA----------CUGGAGU .......((.((((((-(.((((((((....))))))))(((.((((......)))).)))..-----...........)))))))----------.)).... ( -23.80) >DroSim_CAF1 4023 86 - 1 CUAUCAACGAUGCGUU-U-UUCGCCGUAUAUACGGUGAAUUCAUCGCAGCGAAGUGAAGAGAA-----UGGAGCGAGUUAAGCGCA----------CUGGAGU .......((.((((((-(-((((((((....))))))))(((.((((......)))).)))..-----...........)))))))----------.)).... ( -23.80) >DroEre_CAF1 7188 87 - 1 CUAUCAACGAUGCGUUGUUUUCGCCGUAUCCACGGCGAUUUCAUCGCAGCGAAGUGAAGAGAA-----UGGAGCGAAUGAAGCGCA----------C-GGAGU .......((.((((((...((((((((....)))))..((((.((((......)))).)))).-----......)))...))))))----------)-).... ( -26.90) >DroYak_CAF1 3579 88 - 1 CUAUCAACGAUGCGUUGUUUUCGCCGUUUCCACGGCGAAUUCAACGCAGCGAAGUGAAGAGAA-----UGGAGCGAACGAAGCGCA----------UUGGAGU ...(((.((.(((((((..((((((((....))))))))..))))))).))...)))....((-----((..((.......)).))----------))..... ( -32.30) >DroAna_CAF1 3740 94 - 1 CUAUCAACGGUGCGUUUUGGUCGACG----CGCCGCGAAUGUAGCAGAGUGGAGCGGAGCGAA-----UGAAACGAACGAAGCGCAGAGCGCGCAACUGAAAA ...(((.((...((((((..(((.((----(.((((...((...))..)))).)))...))).-----.))))))..))..((((.....))))...)))... ( -30.70) >consensus CUAUCAACGAUGCGUU_UUUUCGCCGUAUACACGGCGAAUUCAUCGCAGCGAAGUGAAGAGAA_____UGGAGCGAAUGAAGCGCA__________CUGGAGU ...(((.((.((((.....((((((((....)))))))).....)))).))...)))...............(((.......))).................. (-17.76 = -18.73 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:02 2006