Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,739,808 – 8,739,907 |
Length | 99 |
Max. P | 0.540142 |
Location | 8,739,808 – 8,739,907 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 88.18 |
Mean single sequence MFE | -27.30 |
Consensus MFE | -18.31 |
Energy contribution | -19.25 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.08 |
Mean z-score | -1.71 |
Structure conservation index | 0.67 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.540142 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8739808 99 - 20766785 AUC-----UUCUUCUUUGCUAUCAUGACUGAAUGAAACUCAUGAAGUUAAUCAGUUCAGUACUGCGGGGUACGGUAAAUACCGCAUAAACGCGGCGACGGACAA ...-----...(((.(((((......(((((((((((((.....))))..))).))))))...(((..((.((((....)))).))...)))))))).)))... ( -23.80) >DroSec_CAF1 2609 99 - 1 UUC-----UUUUUAUUUGGUAUCAUUACUGAAUGAAACUCAUGAAGUCAAUCAGUUGGCUACUGCGGUUUACGGUAAAUGCCGCAUAAACGCGGCGACGGACAA ...-----.(((((((..(((....)))..)))))))........(((..((.......(((((.......)))))...(((((......)))))))..))).. ( -27.20) >DroSim_CAF1 2622 99 - 1 UUC-----UUUUUAUUUGGUAUCAUUACUGAAUGAAACUCAUGAAGUUAAUCAGUUGGCUACUGCAGUUUACGGUAAAUGCCGCAUAAACGCGGCGACGGACAA ...-----.(((((((..(((....)))..)))))))........(((..((.......(((((.......)))))...(((((......)))))))..))).. ( -25.40) >DroEre_CAF1 5716 104 - 1 UUCCACUUUUUUUGUUUGGUAUCAAGACUGAAUGAAACUCAUUCAGCUAAUCAGUGGGCUACUGCGGUUUACGGUAAAUGCCGCAUAAACGCGGCGACGGACAA ...........(((((((.((((.((.(((((((.....))))))))).....(((((((.....)))))))))))..((((((......)))))).))))))) ( -32.80) >consensus UUC_____UUUUUAUUUGGUAUCAUGACUGAAUGAAACUCAUGAAGUUAAUCAGUUGGCUACUGCGGUUUACGGUAAAUGCCGCAUAAACGCGGCGACGGACAA .........(((((((((((......)))))))))))........(((..((.......(((((.......)))))...(((((......)))))))..))).. (-18.31 = -19.25 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:01 2006