Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,629,441 – 1,629,570 |
Length | 129 |
Max. P | 0.871658 |
Location | 1,629,441 – 1,629,539 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.01 |
Mean single sequence MFE | -42.15 |
Consensus MFE | -17.86 |
Energy contribution | -17.50 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.30 |
Mean z-score | -2.05 |
Structure conservation index | 0.42 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613050 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1629441 98 - 20766785 ------GUUGCAACUGCAAUUGUUGAGCAGGGCUGCAGUGACGUCAUCUCGA--------GCGAUUCGUGCUCGCCUUUGGUCGUUGCCGUGGCACUGACCUCGUGCCAAAU-------- ------..((((.((((.........))))...))))(..((((((...(((--------(((.....))))))....))).)))..)..((((((.......))))))...-------- ( -33.10) >DroPse_CAF1 40406 115 - 1 AUCCCCCUUUCGGCUGCAAUUGUGCAGC--GGUCGCGGUGACGUCACCCGGUCUGGGUCUUCGUUUCGUGGCAGCCUUCGG---UUGCUGUGGAACUGACCUCGUGCCAAAUGCAGCACU ............((((((.(((.(((..--(..((.((((....))))))..).(((((...((((((..((((((...))---))))..)))))).)))))..)))))).))))))... ( -53.00) >DroSec_CAF1 15335 98 - 1 ------GUUGCAACUGCAAUUGUUGAGCAGGGCUGCGGUGACGUCAUCUCGA--------GCGAUUCGUGCUCGCCUUUGGUCGUUGCCGUGGCACUGACCUCGUGCCAAAU-------- ------(((((....)))))....((((((.((..(((..((((((...(((--------(((.....))))))....))).)))..)))..)).)))..))).........-------- ( -38.80) >DroSim_CAF1 13772 98 - 1 ------GUUGCAACUGCAACUGUUGAGCAGGGCUGCGGUGACGUCAUCUCGA--------GCGAUUCGUGCUCGCCUUUGGUCGUUGCCGUGGCACUGACCUCGUGCCAAAU-------- ------(((((....)))))....((((((.((..(((..((((((...(((--------(((.....))))))....))).)))..)))..)).)))..))).........-------- ( -41.20) >DroEre_CAF1 17808 98 - 1 ------GUUGCAACUGCAAUUGUUGGGCAGGGCUGCAGUGACGUCAUCUCAA--------GCGAUUCGUGCUCGCCUUUGGUCGUUGCUGUGGCACUGACCUCGUGCCAAAU-------- ------(((((....))))).((.((((((.((..(((..((((((......--------((((.......))))...))).)))..)))..)).))).)))...)).....-------- ( -33.80) >DroPer_CAF1 34944 114 - 1 -CCCCCCUUUCGGCUGCAAUUGUGCAGC--GGUCGCGGUGACGUCACCCGGUCUGGGUCUUCGUUUCGUGGCAGCCUUCGG---UUGCUGUGGAACUGACCUCGUGCCAAAUGCAGCACU -...........((((((.(((.(((..--(..((.((((....))))))..).(((((...((((((..((((((...))---))))..)))))).)))))..)))))).))))))... ( -53.00) >consensus ______GUUGCAACUGCAAUUGUUGAGCAGGGCUGCGGUGACGUCAUCUCGA________GCGAUUCGUGCUCGCCUUUGGUCGUUGCCGUGGCACUGACCUCGUGCCAAAU________ ............((.(((((..(..((...(((((.((((....)))).)).........(((.....)))..)))))..)..))))).))(((((.......)))))............ (-17.86 = -17.50 + -0.36)
Location | 1,629,473 – 1,629,570 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 97.28 |
Mean single sequence MFE | -34.20 |
Consensus MFE | -33.50 |
Energy contribution | -33.88 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.06 |
Mean z-score | -1.92 |
Structure conservation index | 0.98 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.871658 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1629473 97 - 20766785 CUUCGGCUCUCGACUC-UCGCUUCCUGUUUGUGUUGCAACUGCAAUUGUUGAGCAGGGCUGCAGUGACGUCAUCUCGAGCGAUUCGUGCUCGCCUUUG ....(((....(((..-((((((((((((((.(((((....)))))...)))))))))....))))).))).....(((((.....)))))))).... ( -33.20) >DroSec_CAF1 15367 98 - 1 CUUCGGCUCUCGACUCUUCGCUUCCUGUUUGUGUUGCAACUGCAAUUGUUGAGCAGGGCUGCGGUGACGUCAUCUCGAGCGAUUCGUGCUCGCCUUUG ....(((....(((((.((((.(((((((((.(((((....)))))...)))))))))..)))).)).))).....(((((.....)))))))).... ( -36.90) >DroSim_CAF1 13804 98 - 1 CUUCGGCUCUCGACUCUUCGCUUCCUGUUUGUGUUGCAACUGCAACUGUUGAGCAGGGCUGCGGUGACGUCAUCUCGAGCGAUUCGUGCUCGCCUUUG ....(((....(((((.((((.(((((((((.(((((....)))))...)))))))))..)))).)).))).....(((((.....)))))))).... ( -38.40) >DroEre_CAF1 17840 98 - 1 CUUCGGCUCUCGACUCUUCGCUUCCUGUUUGUGUUGCAACUGCAAUUGUUGGGCAGGGCUGCAGUGACGUCAUCUCAAGCGAUUCGUGCUCGCCUUUG ....(((....(((((...((.((((((..(.(((((....)))))...)..))))))..))...)).)))......((((.....)))).))).... ( -28.30) >consensus CUUCGGCUCUCGACUCUUCGCUUCCUGUUUGUGUUGCAACUGCAAUUGUUGAGCAGGGCUGCAGUGACGUCAUCUCGAGCGAUUCGUGCUCGCCUUUG ....(((....(((((.((((.(((((((((.(((((....)))))...)))))))))..)))).)).))).....(((((.....)))))))).... (-33.50 = -33.88 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:20 2006