Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,722,588 – 8,722,689 |
Length | 101 |
Max. P | 0.975239 |
Location | 8,722,588 – 8,722,689 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 71.13 |
Mean single sequence MFE | -32.19 |
Consensus MFE | -14.00 |
Energy contribution | -14.68 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.17 |
Mean z-score | -2.18 |
Structure conservation index | 0.43 |
SVM decision value | 1.75 |
SVM RNA-class probability | 0.975239 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8722588 101 + 20766785 GCUGGAUAUCGAUAU--CCACUAUC--------------AGGGUUGCCACAU--UUUCA-GCCGGUCAGCUGUUGCUUCCGAUAAUCAACUGCAUCUUCUGUUAUCGAUUGGCGGCAACA ..((((((....)))--))).....--------------...((((((....--.....-((((((((((....)))...((((((..............))))))))))))))))))). ( -27.64) >DroSec_CAF1 7696 114 + 1 --UAGCCAUCGAUAUAAUCACUAUCGAUAUAAACACUUUAUGGUUG-CACAC--UUUCA-GCCGGUCAGCUGUUGCUUCCGAUAAGCAACUGCAUCUUCUGUUAUCGAUUGGCGGCAACU --..((((((((((.......)))))))..................-.....--.....-(((((((.((.(((((((.....))))))).)).......(....))))))))))).... ( -31.80) >DroSim_CAF1 8007 114 + 1 --UAGCCAUCGAUAUAAUCACUAUCGAUAUAAACACUUUAUGGUUG-CACAC--UUUCA-GCCGGUCAGCUGUUGCUUCCGAUAAGCAACUGCAUCUUCUGUUAUCGAUUGGCGGCAACU --..((((((((((.......)))))))..................-.....--.....-(((((((.((.(((((((.....))))))).)).......(....))))))))))).... ( -31.80) >DroEre_CAF1 7987 97 + 1 GCCAGC------UAU--CGGCUC--------------UCAUGAUUA-CCUAUCGUUCGUGGGCGGUCAGCUGUUAUUUCCGAUAGGCAGCCGCAUCUGCUGCUAUCGAUUGGCGGCAACA (((...------...--.)))..--------------...((((..-(((((.....)))))..))))(((((((....((((((.((((.......))))))))))..))))))).... ( -34.40) >DroYak_CAF1 8499 102 + 1 GCUAACAAUCGAUAU--CGAGCC--------------UCAUCAUUG-CCUAUCGUUCGA-GGCGGUCAGCUGUUGCUUCCGAUUGGCAAGCGCAUCUCCUGCUAUCGAUUGGCGGCAACA (((..(((((((((.--...(((--------------..(((...(-(((........)-)))((..(((....))).))))).)))....(((.....))))))))))))..))).... ( -35.30) >consensus GCUAGCCAUCGAUAU__CCACUAUC____________UCAUGGUUG_CACAU__UUUCA_GCCGGUCAGCUGUUGCUUCCGAUAAGCAACUGCAUCUUCUGUUAUCGAUUGGCGGCAACA ............................................................(((((((.((.(((((((.....))))))).)).......(....))))))))(....). (-14.00 = -14.68 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:53 2006