Locus 2425

Sequence ID 2R_DroMel_CAF1
Location 8,715,351 – 8,715,449
Length 98
Max. P 0.708296
window4014

overview

Window 4

Location 8,715,351 – 8,715,449
Length 98
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 81.20
Mean single sequence MFE -31.28
Consensus MFE -20.02
Energy contribution -20.55
Covariance contribution 0.53
Combinations/Pair 1.20
Mean z-score -1.87
Structure conservation index 0.64
SVM decision value 0.37
SVM RNA-class probability 0.708296
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8715351 98 + 20766785
UGGAAGCACAGUGGUACAGCUGGUGGGAGAAGGAGGGCUUCUUCACGCCCGAGUACGGAGUGAGUUUAUCCUUGGUUUUGGUUAAAU-----GCUGGUUUCUA
(((((((.((((.((((..(.(((((((((((.....))))))).)))).).)))).......(((((.((........)).)))))-----))))))))))) ( -32.40)
>DroSec_CAF1 448 98 + 1
UGGAGGCACAGUGGUACAGCUGGUGGGAGAAGGAGGGCUUCUUCACGCCAGAGUACGGAGUAAGUUUAUUCUUGGUCUUGGAUAAAU-----GCUGGCUUCUA
(((((((.((((.((((..(((((((((((((.....))))))).)))))).)))).......((((((((........))))))))-----))))))))))) ( -40.70)
>DroSim_CAF1 442 98 + 1
UGGAGGCACAGUGGUACAGCUGGUGGGAGAAGGAGGGCUUCUUCACGCCAGAGUACGGAGUAAGUUUAUUCUUGGUCUUGGAUAAAU-----GCUGGCUUCUA
(((((((.((((.((((..(((((((((((((.....))))))).)))))).)))).......((((((((........))))))))-----))))))))))) ( -40.70)
>DroEre_CAF1 447 98 + 1
UGGAGGCACAGUGGUACAGCUGGUGGGAGAAGGAGGGCUUCUUCACGCCCGAAUACGGAGUGAGUUUGUCCAUGUCUUGGUUAAAAU-----UGUCGUUUCUA
((((((((((((.(((...(.(((((((((((.....))))))).)))).)..)))........((((.(((.....))).))))))-----))).))))))) ( -27.90)
>DroYak_CAF1 447 98 + 1
UGGAGGCACAGUGGUACAGCUGGUGGGAGAAGGAGGGGUUCUUCACGCCUGAGUACGGAGUGAGUUGAUCCAUGUUUUGUGUAAAAC-----AGUAGUUUCUA
(((((((((.((((..(((((.......((((((....)))))).((((((....))).))))))))..))))(((((....)))))-----.)).))))))) ( -25.40)
>DroMoj_CAF1 850 97 + 1
UGGAGGCCCAGUGGUACAGCUGGUGGGAGAAGCAGGGGUUCUUCACACCCGAAUAUGGCGUAAGUGUAAAAAUAUAUUCU------UUUUAAAGUAAUUUCUA
......((((.(((.....))).))))(((((...((((.......))))(((((((((....)).......))))))).------...........))))). ( -20.61)
>consensus
UGGAGGCACAGUGGUACAGCUGGUGGGAGAAGGAGGGCUUCUUCACGCCCGAGUACGGAGUAAGUUUAUCCAUGGUUUUGGUUAAAU_____GCUGGUUUCUA
(((((((......((((....(((((((((((.....))))))).))))...))))(((.........))).........................))))))) (-20.02 = -20.55 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:50 2006