| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,715,003 – 8,715,114 |
| Length | 111 |
| Max. P | 0.894046 |
| Location | 8,715,003 – 8,715,114 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 76.88 |
| Mean single sequence MFE | -35.81 |
| Consensus MFE | -24.65 |
| Energy contribution | -24.71 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.894046 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8715003 111 + 20766785 GGCGGAGAAGCUGGCCAAGCUGCAGGCGAAGCUGGACAAGAAGGCUGCGGCUGCUCCAGCAGCGGGUGAGAAGAAGGAGAAGCCCGAGGUUAGUGA--------AAAAUCCAUCCCAAA ((.(((...(((((((.((((((((.(....((.....))..).))))))))((....))..(((((..............))))).)))))))..--------....)))...))... ( -37.94) >DroVir_CAF1 97 103 + 1 AGCUGAGAAAUUAGCCAAAUUGCAGGCGAAAUUGGACAAAAAGGCAGCGGUUGCACCAGCAGCGGGUGAGAAAAAGGAGAAGCCCGAGGUAAGUGUCUGU---------GCC------- .(((((....))))).........((((.....(((((.....((..(.(((((....)))))((((..............)))))..))...))))).)---------)))------- ( -28.44) >DroSec_CAF1 100 111 + 1 GGCGGAGAAGCUGGCCAAGCUGCAGGCAAAGCUGGAUAAGAAGGCUUCGGCUGCUCCAGCAGCUGGCGAGAAGAAGGAGAAGCCCGAGGUUAGUGA--------GAAAUCCAUCUGAAA ...(((...(((((((.((((((.((...(((((((.........)))))))...)).))))))(((..............)))...)))))))..--------....)))........ ( -36.54) >DroEre_CAF1 99 111 + 1 GGCGGAGAAGCUGGCCAAGCUACAGGCGAAGCUGGAUAAGAAGGCCGCAGCUGCUCCAGCGGCGGGCGACAAAAAGGAGAAGCCCGAGGUUAGUGA--------AAUAUCCAUUCCGAA ..(((((.((((.(((........)))..))))(((((.(..((((.(.(((((....)))))((((..(........)..))))).))))..)..--------..))))).))))).. ( -40.00) >DroYak_CAF1 99 111 + 1 GGCGGAGAAGCUGGCCAAGCUGCAGGCGAAGCUGGAUAAGAAGGCCGCAGCUGCUCCAGCAGCGGGCGACAAAAAGGAGAAGCCCGAGGUUAGUGA--------UGCAUUCAUUCUGAA ..((((...(((((...((((((.(((....((.....))...)))))))))...)))))..(((((..(........)..)))))......((((--------.....)))))))).. ( -39.70) >DroAna_CAF1 96 115 + 1 GGCGGAGAAGUUAGCCAAGCUCCAGGCUAAGCUGGACAAGAAGGCGGCUGCUGCCCCUGCCGCAGGUGAAAAGAAGGAGAAGCCAGAGGUAAGUACUUGUAGAGGGAACACAGCU---- ..........((((((........))))))((((.(((((.(((.(((....))))))(((...(((..............)))...))).....)))))...(....).)))).---- ( -32.24) >consensus GGCGGAGAAGCUGGCCAAGCUGCAGGCGAAGCUGGACAAGAAGGCCGCGGCUGCUCCAGCAGCGGGCGAGAAAAAGGAGAAGCCCGAGGUUAGUGA________AAAAUCCAUCC__AA .........(((((((..(((((.((...(((((.............)))))...)).)))))((((..............))))..)))))))......................... (-24.65 = -24.71 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:48 2006