Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,714,246 – 8,714,349 |
Length | 103 |
Max. P | 0.961572 |
Location | 8,714,246 – 8,714,349 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 75.22 |
Mean single sequence MFE | -21.27 |
Consensus MFE | -13.92 |
Energy contribution | -13.28 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.21 |
Mean z-score | -1.40 |
Structure conservation index | 0.65 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.551545 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8714246 103 + 20766785 CCAGAUUGCAGCGAUAACGCAAUCUAAAUUUUGAGCAGGCCUAUCGAAUUCCGACAGUGCUGUUAAACUACAUUUUCGUUAAAGCUUUUAACAAA------AUAAAGCA ..(((((((.........)))))))........(((((..((.(((.....))).))..)))))...................(((((.......------..))))). ( -19.70) >DroSec_CAF1 20477 91 + 1 CCAGAUUGCAGCGAUAACGCAAUCUUAUUCUUGAGCAGGCCUAUCGAAUUCCGACAAUGCUGUCAAACUG------------AACUUAUAUUAAA------AAAAGCCA .(((.((((((((.....((...((((....))))...))...(((.....)))...))))).))).)))------------.............------........ ( -16.60) >DroSim_CAF1 23321 91 + 1 CCAGAUUGCAGCGAUAACGCAAUCUUUUUCUUGAGCAGGCCUAUCGAAUUCCGACAGUGCUGUCAAACUG------------AGCUUAUAUUAAA------AAAAACCA ..(((((((.........)))))))......(((((.(((((.(((.....))).)).))).((.....)------------)))))).......------........ ( -18.10) >DroEre_CAF1 21060 108 + 1 CCAGAUUGUGGCGAUAACACAAUCUAAUUCUUGAAUAGGUCUAUCGAAAUCCGACAGUGCUGCCAAACUGAAU-UUAGCGAAAGCUUGUAACAAAGUCAUAACAGGUUA ..((((((((.......))))))))....((((....(((((.(((.....))).))....)))..(((....-..(((....)))........))).....))))... ( -22.94) >DroYak_CAF1 21135 102 + 1 CCAGAUUGUAGCGAUAAUACAAUCUAAUUCUUGCUCAGGCCUAUCGAUAUACGACAGUGCUGGCAAACUGAAU-UUAGCGAAAGUUUGUUGCAAA------AUAGGCCA ..((((((((.......))))))))............(((((((((.....)))...(((.((((((((....-........)))))))))))..------.)))))). ( -29.00) >consensus CCAGAUUGCAGCGAUAACGCAAUCUAAUUCUUGAGCAGGCCUAUCGAAUUCCGACAGUGCUGUCAAACUG_AU_UU_G__AAAGCUUAUAACAAA______AAAAGCCA ..(((((((.........))))))).....((((.(((..((.(((.....))).))..)))))))........................................... (-13.92 = -13.28 + -0.64)
Location | 8,714,246 – 8,714,349 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 75.22 |
Mean single sequence MFE | -23.80 |
Consensus MFE | -20.68 |
Energy contribution | -19.52 |
Covariance contribution | -1.16 |
Combinations/Pair | 1.32 |
Mean z-score | -1.21 |
Structure conservation index | 0.87 |
SVM decision value | 1.53 |
SVM RNA-class probability | 0.961572 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8714246 103 - 20766785 UGCUUUAU------UUUGUUAAAAGCUUUAACGAAAAUGUAGUUUAACAGCACUGUCGGAAUUCGAUAGGCCUGCUCAAAAUUUAGAUUGCGUUAUCGCUGCAAUCUGG .(((.(((------((((((((.....))))).)))))).)))....(((..((((((.....))))))..))).........(((((((((.......))))))))). ( -24.90) >DroSec_CAF1 20477 91 - 1 UGGCUUUU------UUUAAUAUAAGUU------------CAGUUUGACAGCAUUGUCGGAAUUCGAUAGGCCUGCUCAAGAAUAAGAUUGCGUUAUCGCUGCAAUCUGG ........------..........(((------------(...(((((((..((((((.....))))))..))).)))))))).((((((((.......)))))))).. ( -19.60) >DroSim_CAF1 23321 91 - 1 UGGUUUUU------UUUAAUAUAAGCU------------CAGUUUGACAGCACUGUCGGAAUUCGAUAGGCCUGCUCAAGAAAAAGAUUGCGUUAUCGCUGCAAUCUGG .(((((..------........)))))------------...((((((((..((((((.....))))))..))).)))))....((((((((.......)))))))).. ( -22.30) >DroEre_CAF1 21060 108 - 1 UAACCUGUUAUGACUUUGUUACAAGCUUUCGCUAA-AUUCAGUUUGGCAGCACUGUCGGAUUUCGAUAGACCUAUUCAAGAAUUAGAUUGUGUUAUCGCCACAAUCUGG ....((((((.((((..(((...(((....))).)-))..))))))))))..((((((.....))))))..............(((((((((.......))))))))). ( -24.90) >DroYak_CAF1 21135 102 - 1 UGGCCUAU------UUUGCAACAAACUUUCGCUAA-AUUCAGUUUGCCAGCACUGUCGUAUAUCGAUAGGCCUGAGCAAGAAUUAGAUUGUAUUAUCGCUACAAUCUGG .......(------(((((..((((((........-....)))))).(((..((((((.....))))))..))).))))))..(((((((((.......))))))))). ( -27.30) >consensus UGGCUUAU______UUUGAUACAAGCUUU__C_AA_AU_CAGUUUGACAGCACUGUCGGAAUUCGAUAGGCCUGCUCAAGAAUUAGAUUGCGUUAUCGCUGCAAUCUGG ..........................................((((((((..((((((.....))))))..))).)))))....((((((((.......)))))))).. (-20.68 = -19.52 + -1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:47 2006