Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,710,651 – 8,710,751 |
Length | 100 |
Max. P | 0.620824 |
Location | 8,710,651 – 8,710,751 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 87.86 |
Mean single sequence MFE | -29.18 |
Consensus MFE | -21.81 |
Energy contribution | -22.62 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.09 |
Mean z-score | -1.57 |
Structure conservation index | 0.75 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.620824 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8710651 100 + 20766785 ---GCACCCUUUCUCCACCCACAAAAA---UAAGGGGAAACCCGUCACUCGGCAAGGAUAAAGUGCGCUCCAGGCGGAAUAUACUGCAUCACCUGCAUGCCGAGUC ---((((..(((.(((...........---...(((....)))(((....)))..))).)))))))((((..((((........((((.....)))))))))))). ( -28.20) >DroSec_CAF1 16786 100 + 1 ---GCACCCUUUCUCCACCCACAAAAA---UAAGGGGAAACCCGUCACUCUGCAAGGAUAAAGUGUGCUCCAGGCGGAAUAUACUGCAUCACCUGCAUGCCGAGUC ---((((.((((.(((...........---...(((....)))((......))..))).)))).))))....((((........((((.....))))))))..... ( -27.60) >DroEre_CAF1 17608 101 + 1 CCUGCACCCCUUCUCCACCCACAAGCA---UAAGGGGAAACCGGGCACUCUGCAAGGA--AAGUGUGCUCCAGGCGAAGCAUACUGCAUCACCUGCACGCCGAGUC (((((((((.((((((...........---...))))))...))).....))).))).--..((((((...(((.((.((.....)).)).)))))))))...... ( -29.44) >DroYak_CAF1 17610 103 + 1 ---GCACUCAUUCUUCACCCACAAAAAAAUUGAGGGGAGACCCGGCACUCUGCAAGGAUAAAGUGUGCUCCAGGCGGAAAAUACUGCAUCACCUGCACGCCGAGUC ---..((((........................(((....)))(((....((((.((((..(((((..(((....)))..)))))..))).).)))).))))))). ( -31.50) >consensus ___GCACCCUUUCUCCACCCACAAAAA___UAAGGGGAAACCCGGCACUCUGCAAGGAUAAAGUGUGCUCCAGGCGGAAUAUACUGCAUCACCUGCACGCCGAGUC ...((((.((((.(((.................(((....)))(........)..))).)))).))))....((((........((((.....))))))))..... (-21.81 = -22.62 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:44 2006