Locus 242

Sequence ID 2R_DroMel_CAF1
Location 1,628,607 – 1,628,704
Length 97
Max. P 0.509145
window521

overview

Window 1

Location 1,628,607 – 1,628,704
Length 97
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 83.61
Mean single sequence MFE -39.60
Consensus MFE -33.88
Energy contribution -33.77
Covariance contribution -0.11
Combinations/Pair 1.08
Mean z-score -1.23
Structure conservation index 0.86
SVM decision value -0.05
SVM RNA-class probability 0.509145
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1628607 97 - 20766785
GUCACAACUGCAACUGGGAGAGGGACCCAGAAAGACGCCAAGUAAACCGCAAGGACAUUGACGUCAGCCCUGUCCCUUUCGCGCAGCGUGCUGUCCC-----------------------
(.(((..((((....(.(((((((((...(...((((.(((.....((....))...))).))))..)...))))))))).))))).))))......----------------------- ( -32.50)
>DroSec_CAF1 14492 120 - 1
GUCACAACUGCAACUGGGGCAGGGACCCAGAGAGACGCCAAGUAAACCGCAAGGACAUUGACGUCAGCCCUGUCCCUCUUGCGCAGCGUGCUGUCCCGCUCCGUCGAACGUGAUGUACAG
(((((....((((..(((((((((.(.....).((((.(((.....((....))...))).))))..)))))))))..))))(.((((........)))).).......)))))...... ( -43.70)
>DroSim_CAF1 12914 120 - 1
GUCACAACUGCAACUGGGGCAGGGACCCAGAAAGACGCCAAGUAAACCGCAAGGACAUUGACGUCAGCCCUGCCCCUCUCGCGCAGCGUGCUGUCCCGCUCCAUCGAACGUGAUGUACAG
(((((....((....(((((((((.........((((.(((.....((....))...))).))))..)))))))))....))(.((((........)))).).......)))))...... ( -42.60)
>consensus
GUCACAACUGCAACUGGGGCAGGGACCCAGAAAGACGCCAAGUAAACCGCAAGGACAUUGACGUCAGCCCUGUCCCUCUCGCGCAGCGUGCUGUCCCGCUCC_UCGAACGUGAUGUACAG
(.(((..((((....(((((((((.........((((.(((.....((....))...))).))))..)))))))))......)))).))))............................. (-33.88 = -33.77 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:18 2006